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Thanks for reporting! I agree Scalafix should respect -P:semanticdb:targetroot if it's defined. We already know scalacOptions so this should not be difficult to fix.
steps
project/build.properties
project/plugins.scala
build.sbt
Main.scala
problem
expectation
I can move semanticdb out of classes directory, and still use Scalafix.
notes
https://github.com/scalacenter/scalafix/blob/v0.8.0-RC1/scalafix-core/src/main/scala/scalafix/v1/SemanticDocument.scala#L57-L58
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