The data analysis for the data generated by the OrgaMapper Fiji plugin:
OrgaMapper github pages
OrgaMapper repository
The R data processing and plotting is implemented as Shiny App. This allows you to read in the output data and execute the data processing using a graphical interface. Summary plots are shown in the OrgaMapper Shiny App directly for user convenience.
Install r and r studio for running the rShiny app:
https://www.r-project.org/
https://rstudio.com/products/rstudio/download/
Then download the contents of the OrgaMapper_Rshiny repository:
OrgaMapper Rshiny
OrgaMapper github pages
rShiny App Execution
Analysis Results