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Update release notes for v0.1.1
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gtca committed Oct 8, 2021
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Expand Up @@ -15,19 +15,13 @@ v0.1.1

``MuData`` is now provided `as a separate package <https://mudata.readthedocs.io/>`_. Since this release, ``mudata`` is a hard dependency of ``muon``. Making the codebase more modular, this will also help developing tools around ``MuData`` that do not depend on ``scanpy`` or ``muon``.

* Fixes:
We fixed a few things including reading ``.h5mu`` files in backed mode when modalities have ``.raw`` attributes (this is live in the ``mudata`` library), ``SNF`` functionality (:func:`muon.tl.snf`) and colouring plots by ``var_names`` that are present in ``.raw`` but not in the root ``AnnData`` object.

* ``[mudata]`` Fix reading ``.h5mu`` files in backed mode when modalities have ``.raw`` attributes.

* Fix colouring plots by ``var_names`` that are present in ``.raw`` but not in the root ``AnnData`` object.

* New features:

* ATAC module
We also introduced some new features for the ATAC module including:

* Handle fragments files with barcodes different than ``obs_names``.
* handling fragments files with barcodes different than ``obs_names`` and

* Support ``atac_peak_annotation.tsv`` files produced by Cell Ranger ARC 2.0.0.
* supporting ``atac_peak_annotation.tsv`` files produced by Cell Ranger ARC 2.0.0.

v0.1.0
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