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Sparse Matrix Representations of Feature Space using Eigen3

Co-occurrence analysis - bread and butter metrics and filtering provides the following tools:

  • samples2cooc - create co-occurrence matrix and feature list from samples
  • cooc2logl - compute log likelihood of co-occurrences
  • loglfilter - filter input co-occurrence matrix based on logl threshold
  • AB-cosine - compare feature vectors in co-occurrence matrix
  • show_features - human readable feature vectors using co-occurrence matrix and feature list

Also provides some general eigen3 matrix utilities

  • dumpmat - dump matrix contents to stdout useful for eyeballing computations and debugging

And useful C++ headers

  • index_bimap.hpp
  • sparse_matrix.hpp
  • sparse_matrix_io.hpp

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