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[WIP] count_allele_calls #114

Merged
merged 16 commits into from
Aug 25, 2020
Merged

[WIP] count_allele_calls #114

merged 16 commits into from
Aug 25, 2020

Commits on Aug 16, 2020

  1. Implement count_call_alleles sgkit-dev#85

    @timothymillar
    timothymillar committed Aug 16, 2020
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  2. Fixes for mypy and black

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    timothymillar committed Aug 16, 2020
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  3. Merge branch 'master' into f/85-count_call_alleles

    @timothymillar
    timothymillar authored Aug 16, 2020
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  4. Add dependency on numba

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    timothymillar committed Aug 16, 2020
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Commits on Aug 18, 2020

  1. gufunc implementation of count_alleles

    @timothymillar
    timothymillar committed Aug 18, 2020
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Commits on Aug 19, 2020

  1. Fix count alleles bug for chunking

    @timothymillar
    timothymillar committed Aug 19, 2020
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  2. Fix doctest for count_call_alleles

    @timothymillar
    timothymillar committed Aug 19, 2020
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  3. Docstring for gufunc

    @timothymillar
    timothymillar committed Aug 19, 2020
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  4. Merge branch 'master' into f/85-count_call_alleles

    @timothymillar
    timothymillar authored Aug 19, 2020
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  5. Remove duplication in setup.cfg

    @timothymillar
    timothymillar committed Aug 19, 2020
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  6. Fixes for pre-commit

    @timothymillar
    timothymillar committed Aug 19, 2020
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  7. Add ignore type checking for guvectorize decorator

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    timothymillar committed Aug 19, 2020
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  8. Explicit import of guvectorize

    @timothymillar
    timothymillar committed Aug 19, 2020
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Commits on Aug 20, 2020

  1. Use display_genotypes in aggregation docstrings

    @timothymillar
    timothymillar committed Aug 20, 2020
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  2. Numpy style docstring for count_alleles

    @timothymillar
    timothymillar committed Aug 20, 2020
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Commits on Aug 24, 2020

  1. Merge branch 'master' into f/85-count_call_alleles

    @mergify
    mergify[bot] authored Aug 24, 2020
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