Requirements
- python 3.6
- networkx
- numpy
- scikit-learn
- gensim
Code References
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Original node2vec: Aditya Grover and Jure Leskovec. https://github.com/aditya-grover/node2vec
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Implementation of node2vec: https://github.com/lucashu1/link-prediction
@misc{lucas_hu_2018_1408472, author = {Lucas Hu and Thomas Kipf and Gökçen Eraslan}, title = {{lucashu1/link-prediction: v0.1: FB and Twitter Networks}}, month = sep, year = 2018, doi = {10.5281/zenodo.1408472}, url = {https://doi.org/10.5281/zenodo.1408472} }
Citing
If you find HPO2Vec+ useful for your research, please cite the following paper:
Shen F, Peng S, Fan Y, Wen A, Liu S, Wang Y, Wang L, Liu H. HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. Journal of biomedical informatics. 2019 Aug 1;96:103246.