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sjanssen2 committed Nov 24, 2024
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Expand Up @@ -43,6 +43,7 @@ jobs:
- name: functional test
run: |
sepp-package/run-sepp.sh test/unittest/data/q2-fragment-insertion/input_fragments.fasta funcTest -x 2 -a test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta -t test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk -r test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info
cat *funcTest-err.log
diff funcTest_placement.tog.relabelled.tre test/functionaltest/funcTest_q2-tiny_placement.tog.relabelled.tre
# - name: convert coverage
# shell: bash -el {0}
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