gtBio

About

A C++ library that provides extremely fast processing of bioinformatics data.

For information on the directories contained in this project, see the Package Structure page.

Building

R Package

If you have sudo permissions:

$ cd gtBio
$ R CMD INSTALL .
$ grokit makelib ../bio

To install locally:

$ cd gtBio
$ R CMD INSTALL -l ~/my/directory .
$ grokit makelib ../bio

where ~/my/directory is a folder R knows to search for libraries.

Testing

There are currently unresolved bugs in using testthat. So instead, the example scripts serve as tests. If they all execute normally, then gtBio is operational.

The demo data needed for these tests can be found in earlier versions of master. Soon we'll add an automated way to get this data.