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fix: adapt to API changes in snakemake-interface-storage-plugins #36

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fix: adapt to API changes in snakemake-interface-storage-plugins

fix: adapt to API changes in snakemake-interface-storage-plugins #36

Workflow file for this run

.github/workflows/test.yml at 70c0655
name: CI
on:
push:
branches:
- main
pull_request:
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- name: Install poetry
run: pipx install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.9"
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check formatting
run: poetry run black --check .
linting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- name: Install poetry
run: pipx install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.9"
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check code
run: poetry run flake8
testing:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Install poetry
run: pipx install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.9"
cache: poetry
- name: Install dependencies
run: |
poetry install
- name: Install example plugin
run: |
pip install --no-dependencies git+https://github.com/snakemake/snakemake-executor-flux.git
- name: Run pytest
run: poetry run coverage run -m pytest tests/tests.py
- name: Run Coverage
run: poetry run coverage report -m