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Overview

Library for common operations on GFA graphs and some processing algorithms. wrapper.hpp provides a C++ interface from gfatools (https://github.com/lh3/gfatools/) implementation of sequence graphs and some additional functionality.

Get and compile

To clone:

git clone --recurse-submodules git@github.com:snurk/gfacpp.git

To compile:

cd gfacpp ; make

Each binary in build folder corresponds to one processing algorithm. Run binary required parameters.

Description of individual procedures

TBD

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