v1.4.0 tag

AlphaFold2.ipynb

@@ -45,7 +45,7 @@
       "source": [
         "<img src=\"https://raw.githubusercontent.com/sokrypton/ColabFold/main/.github/ColabFold_Marv_Logo_Small.png\" height=\"200\" align=\"right\" style=\"height:240px\">\n",
         "\n",
-        "##ColabFold v1.4: AlphaFold2 using MMseqs2\n",
+        "##ColabFold v1.4.0: AlphaFold2 using MMseqs2\n",
         "\n",
         "Easy to use protein structure and complex prediction using [AlphaFold2](https://www.nature.com/articles/s41586-021-03819-2) and [Alphafold2-multimer](https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). Sequence alignments/templates are generated through [MMseqs2](mmseqs.com) and [HHsearch](https://github.com/soedinglab/hh-suite). For more details, see <a href=\"#Instructions\">bottom</a> of the notebook, checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold) and read our manuscript. Old versions: [v1.0](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.0-alpha/AlphaFold2.ipynb), [v1.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.1-premultimer/AlphaFold2.ipynb), [v1.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.2.0/AlphaFold2.ipynb), [v1.3](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.3.0/AlphaFold2.ipynb)\n",
         "\n",
@@ -212,7 +212,7 @@
         "if [ ! -f COLABFOLD_READY ]; then\n",
         "  # install dependencies\n",
         "  # We have to use \"--no-warn-conflicts\" because colab already has a lot preinstalled with requirements different to ours\n",
-        "  pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.4\"\n",
+        "  pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.4.0\"\n",
         "  # high risk high gain\n",
         "  pip install -q \"jax[cuda11_cudnn805]>=0.3.8,<0.4\" -f https://storage.googleapis.com/jax-releases/jax_releases.html\n",
         "  touch COLABFOLD_READY\n",

batch/AlphaFold2_batch.ipynb

@@ -35,7 +35,7 @@
         "id": "G4yBrceuFbf3"
       },
       "source": [
-        "#ColabFold v1.4: AlphaFold2 w/ MMseqs2 BATCH\n",
+        "#ColabFold v1.4.0: AlphaFold2 w/ MMseqs2 BATCH\n",
         "\n",
         "<img src=\"https://raw.githubusercontent.com/sokrypton/ColabFold/main/.github/ColabFold_Marv_Logo_Small.png\" height=\"256\" align=\"right\" style=\"height:256px\">\n",
         "\n",
@@ -119,7 +119,7 @@
         "if [ ! -f COLABFOLD_READY ]; then\n",
         "  # install dependencies\n",
         "  # We have to use \"--no-warn-conflicts\" because colab already has a lot preinstalled with requirements different to ours\n",
-        "  pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.4\"\n",
+        "  pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.4.0\"\n",
         "  # high risk high gain\n",
         "  pip install -q \"jax[cuda11_cudnn805]>=0.3.8,<0.4\" -f https://storage.googleapis.com/jax-releases/jax_releases.html\n",
         "  touch COLABFOLD_READY\n",