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Implement client for MGI resources #1391

Merged
merged 6 commits into from
Sep 9, 2022
Merged

Implement client for MGI resources #1391

merged 6 commits into from
Sep 9, 2022

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bgyori
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@bgyori bgyori commented Sep 9, 2022

This PR implements a client for MGI data on mouse genes. It is similar to #1339 but uses MGI data directly instead for simplicity. The PR also adds functions to the HGNC client that allow for mapping to human genes from MGI-based gene names. Though these conversions were possible previously via UniProt, it turns out that UniProt in many cases only has unreviewed proteins corresponding to mouse genes, resulting in gaps in conversion. So using MGI name/ID mappings provides better results in such conversions overall.

@bgyori bgyori merged commit 9886850 into sorgerlab:master Sep 9, 2022
@bgyori bgyori deleted the mgi branch September 12, 2022 23:29
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