Implement retrieving more than 10k PMIDs and all metadata #1424
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cthoyt
reviewed
Oct 27, 2023
bgyori
changed the title
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This PR adds a simple wrapper around PubMed's edirect CLI (https://www.ncbi.nlm.nih.gov/books/NBK179288/) to retreive PMIDs such that we can easily get all PMIDs for queries that return more than 10k results (this turns out to be very convoluted to solve with the REST API even if not entirely impossible).
It also adds a wrapper around a function for getting metadata to allow for a single function call above the limit of 200 PMIDs per metadata request call.