MRG: refactor calculate_gather_stats to disallow repeated downsampling
#7459
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: cibuildwheel | |
| permissions: write-all | |
| on: | |
| push: | |
| branches: [latest] | |
| tags: v* | |
| pull_request: | |
| schedule: | |
| - cron: "0 0 * * *" # daily | |
| jobs: | |
| build_wheels: | |
| name: Build wheels for ${{ matrix.os }}-${{ matrix.arch }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| build: [ | |
| linux-x86_64, | |
| macos-x86_64, | |
| macos-arm64, | |
| ] | |
| include: | |
| - build: linux-x86_64 | |
| os: ubuntu-20.04 | |
| arch: x86_64 | |
| macos_target: '' | |
| - build: macos-x86_64 | |
| os: macos-latest | |
| arch: x86_64 | |
| macos_target: 'MACOSX_DEPLOYMENT_TARGET=11.0 CARGO_BUILD_TARGET=x86_64-apple-darwin' | |
| - build: macos-arm64 | |
| os: macos-latest | |
| arch: arm64 | |
| macos_target: 'MACOSX_DEPLOYMENT_TARGET=11.0 CARGO_BUILD_TARGET=aarch64-apple-darwin' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.21.2 | |
| env: | |
| CIBW_ENVIRONMENT_MACOS: ${{ matrix.macos_target }} | |
| CIBW_ARCHS_LINUX: ${{ matrix.arch }} | |
| CIBW_ARCHS_MACOS: ${{ matrix.arch }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-${{ matrix.build }}-${{ matrix.os }} | |
| path: './wheelhouse/sourmash*.whl' | |
| build_wasm: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.21.2 | |
| env: | |
| CIBW_PLATFORM: pyodide | |
| CIBW_BUILD: 'cp312-pyodide_wasm32' | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-wasm | |
| path: './wheelhouse/sourmash*.whl' | |
| release: | |
| name: Publish wheels | |
| runs-on: ubuntu-20.04 | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: [build_wheels, build_wasm] | |
| steps: | |
| - name: Fetch wheels from artifacts | |
| id: fetch_artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: 'wheels/' | |
| # if it matches a Python release tag, upload to github releases | |
| - name: Release | |
| uses: softprops/action-gh-release@v2 | |
| with: | |
| files: | | |
| ${{steps.fetch_artifacts.outputs.download-path}}/wheel-*/* |