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[MRG] update the databases page with GTDB R07-RS207 and Genbank 2022.03 #2013
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Codecov Report
@@ Coverage Diff @@
## latest #2013 +/- ##
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+ Coverage 84.14% 91.66% +7.52%
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Files 129 98 -31
Lines 15082 10802 -4280
Branches 2118 2118
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- Hits 12691 9902 -2789
+ Misses 2095 604 -1491
Partials 296 296
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Ready for review and merge @sourmash-bio/devs ! I would rather not do more actual work per se, so if you have ideas for different/additional databases or information we should provide, please put them in an issue (maybe #970, or a new issue). But it's totally fair game to suggest rearranging content or updating the formatting or changing words! |
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looking good.
I think it needs some minimal info on scaled
-- suggested some additions. Are all databases here scaled=1000
, or are the lca
/genbank
at lower resolution?
Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
See Appendix section ;). (LCA is at 10k, rest are at 1000.) |
ok, revised wording appropriately. Should be ready for review! |
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lgtm!
This updates the "prepared databases" page with the new GTDB and the March 2022 Genbank genomes.
Closes #1941 🎉
Both the GTDB and Genbank updates were built with the database-releases code here.
The Genbank taxonomy was built from
assembly_summary
files using these scripts.View the updated databases page HERE.