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Bump myst-parser from 2.0.0 to 3.0.1 #3133

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Apr 29, 2024
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@dependabot dependabot bot commented on behalf of github Apr 29, 2024

Bumps myst-parser from 2.0.0 to 3.0.1.

Release notes

Sourced from myst-parser's releases.

v3.0.1

What's Changed

Full Changelog: executablebooks/MyST-Parser@v3.0.0...v3.0.1

v3.0.0

What's Changed

Upgraded dependencies

New features

Improvements

Internal

Documentation

... (truncated)

Changelog

Sourced from myst-parser's changelog.

3.0.1 - 2024-04-28

🐛 Bug Fixes

  • Account for the final directive option having an empty value, by gh-user:chrisjsewell in gh-pr:924
  • Re-allow indented directive option blocks, by gh-user:chrisjsewell in gh-pr:925

Full Changelog: v3.0.1...v3.0.0

3.0.0 - 2024-04-23

Upgraded dependencies

  • ⬆️ Add support for Python 3.12 by gh-user:hugovk in gh-pr:848
  • ⬆️ Update docutils requirement from >=0.16,

New features

  • ✨ Allow for use of the line-block directive by gh-user:chrisjsewell in gh-pr:900
  • ✨ Emits sphinx include-read event by gh-user:sumezulike in gh-pr:887

Improvements

  • 👌 Nested parse attribution in attr_block by gh-user:chrisjsewell in gh-pr:831
  • 👌 Directive option parsing by gh-user:chrisjsewell in <gh-pr:796
  • 👌 Improve directive parsing warnings by gh-user:chrisjsewell in gh-pr:893
  • 👌 Allow for opening external links in new tabs (#856) by gh-user:marjus45 in gh-pr:857

Internal

  • 🔧 Replace black, isort, pyupgrade with ruff formatter by gh-user:chrisjsewell in gh-pr:833
  • 🔧 remove redundant mypy config by gh-user:danieleades in gh-pr:866
  • 🔧 Add additional Ruff lints (and fix issues) by gh-user:danieleades in gh-pr:862
  • 🔧 mypy- disallow 'any generics' by gh-user:danieleades in gh-pr:865
  • 🔧 Fix docutils deprecation in option parsing by gh-user:agoose77 in gh-pr:842

Documentation

  • 📚 Fix a broken link in configuration.md by gh-user:zupo in gh-pr:907
  • 📚 Add linkify dependency to contributing docs. by gh-user:jhcole in gh-pr:792
  • 📚 Fix the double used in docs/syntax/math.md by gh-user:ice-tong in gh-pr:810
  • 📚 Also add linkify to pip install command in README by gh-user:n-peugnet in gh-pr:851
  • 📚 Fix the code section title in live preview by gh-user:BoboTiG in gh-pr:875
  • 📚 Fix admonition example by gh-user:72757373656c6c in gh-pr:904
  • 📚 Fix url for jupyter book gallery by gh-user:72757373656c6c in gh-pr:905
  • 📚 Update theme version by gh-user:chrisjsewell in gh-pr:918
  • 📚 Fix typo by gh-user:blakeNaccarato in gh-pr:911
  • 📚 Fix architecture typo (#855) by gh-user:72757373656c6c in gh-pr:910

Full Changelog: v2.0.0...v3.0.0

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Bumps [myst-parser](https://github.com/executablebooks/MyST-Parser) from 2.0.0 to 3.0.1.
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v2.0.0...v3.0.1)

---
updated-dependencies:
- dependency-name: myst-parser
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Apr 29, 2024
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codecov bot commented Apr 29, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.55%. Comparing base (b9a03ef) to head (1416196).

Additional details and impacted files
@@           Coverage Diff           @@
##           latest    #3133   +/-   ##
=======================================
  Coverage   86.55%   86.55%           
=======================================
  Files         136      136           
  Lines       15809    15809           
  Branches     2713     2713           
=======================================
  Hits        13683    13683           
  Misses       1816     1816           
  Partials      310      310           
Flag Coverage Δ
hypothesis-py 25.36% <ø> (ø)
python 92.32% <ø> (ø)
rust 61.47% <ø> (ø)

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@ctb ctb merged commit 0367d78 into latest Apr 29, 2024
38 of 40 checks passed
@ctb ctb deleted the dependabot/pip/myst-parser-3.0.1 branch April 29, 2024 21:33
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ctb commented Apr 29, 2024

Note to all - I manually verified that the docs look ok after this :)

@ctb ctb mentioned this pull request Jun 10, 2024
ctb added a commit that referenced this pull request Jun 11, 2024
Minor new features:

* add `--set-name` to `sig intersect` and `sig subtract` (#3162)
* upgrade `sig overlap` and `sig subtract` to load more than JSON
signatures (#3153)
* force continue past `tax genome` classification errors (#3100)

Bug fixes:

* fix `remaining_bp` output from sourmash gather (#3195)
* fix RocksDB-based gather & other rust-based infelicities revealed by
plugins (#3193, #3197)
* use correct denominator in f_unique_to_query (#3138)

Cleanup and documentation updates:

* update JOSS for sourmash v4 (#3114, #3203, #3209)
* fix links to taxonomy spreadsheets (#3119)
* fix description of `f_unique_weighted` (#3164)

Developer updates:

* transition internal signature loading functions (#3161)
* allow get/set record.filename (#3121)
* round a number that is losing precision in 15th place in
`test_distance_utpy` (#3126)
* disable ppc64le wheel building (#3127)
* prepare to remove `sourmash compute` for sourmash v5.0 (#3103)
* add rustup target x86_64-apple-darwin (#3148)
* mv `.cargo/config` to `config.toml` (#3147)
* fix clippy warnings about max_value (#3146)
* bump to v4.8.9-dev (#3135)
* update src/core/CHANGELOG.md for sourmash-rs core release r0.14.0
(#3199)

Dependabot updates:

* Bump DeterminateSystems/nix-installer-action from 11 to 12 (#3184)
* Bump DeterminateSystems/magic-nix-cache-action from 6 to 7 (#3185)
* Bump statrs from 0.16.0 to 0.16.1 (#3186)
* Bump serde from 1.0.202 to 1.0.203 (#3175)
* Bump ouroboros from 0.18.3 to 0.18.4 (#3176)
* Bump itertools from 0.12.1 to 0.13.0 (#3166)
* Bump camino from 1.1.6 to 1.1.7 (#3169)
* Bump serde from 1.0.201 to 1.0.202 (#3168)
* Bump thiserror from 1.0.60 to 1.0.61 (#3167)
* Bump pypa/cibuildwheel from 2.18.0 to 2.18.1 (#3165)
* Bump DeterminateSystems/magic-nix-cache-action from 4 to 6 (#3157)
* Bump DeterminateSystems/nix-installer-action from 10 to 11 (#3156)
* Bump pypa/cibuildwheel from 2.17.0 to 2.18.0 (#3155)
* Bump serde_json from 1.0.116 to 1.0.117 (#3159)
* Bump thiserror from 1.0.59 to 1.0.60 (#3158)
* Bump serde from 1.0.200 to 1.0.201 (#3160)
* Bump roaring from 0.10.3 to 0.10.4 (#3142)
* Bump histogram from 0.10.0 to 0.10.1 (#3141)
* Bump getrandom from 0.2.14 to 0.2.15 (#3143)
* Bump num-iter from 0.1.44 to 0.1.45 (#3140)
* Bump jinja2 from 3.1.3 to 3.1.4 (#3145)
* Bump serde from 1.0.199 to 1.0.200 (#3144)
* Bump serde from 1.0.198 to 1.0.199 (#3130)
* Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#3131)
* Update pytest requirement from <8.2.0,>=6.2.4 to >=6.2.4,<8.3.0
(#3132)
* Bump myst-parser from 2.0.0 to 3.0.1 (#3133)
* Bump thiserror from 1.0.58 to 1.0.59 (#3123)
* Bump serde_json from 1.0.115 to 1.0.116 (#3124)
* Bump serde from 1.0.197 to 1.0.198 (#3122)
* Update docutils requirement from <0.21,>=0.17.1 to >=0.17.1,<0.22
(#3116)
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