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85 Open 124 Closed
85 Open 124 Closed
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Issues list

update code to use min_max_scaled
#527 opened Nov 16, 2024 by ctb
gather and manysearch benchmarks for branchwater plugin v0.9.11
#525 opened Nov 16, 2024 by ctb
note in docs that scaled factor should significantly improve speed, after i/o
#524 opened Nov 16, 2024 by ctb
add .zip output to singlesketch
#521 opened Nov 15, 2024 by ctb
fix moltype handling in singlesketch
#520 opened Nov 15, 2024 by ctb
improve error reporting when a standalone manifest can't be loaded
#512 opened Nov 12, 2024 by ctb
refactor, test, and benchmark different scaled factors across the plugin
#510 opened Nov 11, 2024 by ctb
1
fastmultigather x rocksdb doesn't actually use multiple cores
#503 opened Nov 8, 2024 by ctb
6
error message: "not implemented: only one Signature currently allowed when using 'load_sig'"
#501 opened Nov 6, 2024 by ctb
1
fastmultigather produces different results when searching against a normal zip-type database and a Rocksdb inverted index database
#483 opened Oct 17, 2024 by JiaweiShen1116
1
11
revisit memory fix for fastmultigather - use into_par_iter properly
#482 opened Oct 17, 2024 by ctb
1
consider support env_logger, perhaps via features
#480 opened Oct 17, 2024 by ctb
gather and manysearch benchmarks for plugin v0.9.6 and v0.9.8
#479 opened Oct 16, 2024 by ctb
8
add tests for relative paths in pathlists and manifests
#478 opened Oct 16, 2024 by ctb
benchmark subsets of databases via standalone manifests
#476 opened Oct 16, 2024 by ctb
consolidate gather stats calculations
#473 opened Oct 13, 2024 by ctb
1
validate gather with mismatched scaled values
#469 opened Oct 12, 2024 by ctb
10-fold manysearch performance slowdown between v0.9.5 and v0.9.6
#463 opened Oct 2, 2024 by ctb
4
consider parallelizing manysketch at the level of individual files
#448 opened Sep 3, 2024 by ctb
make use of & document RocksDB resumability
#440 opened Aug 25, 2024 by ctb
document that RocksDB-based manysearch does not load all query sketches into memory!!!
#439 opened Aug 24, 2024 by ctb
2
Allow writing gzip/zip sigs with fastmultigather --save-matches
#426 opened Aug 17, 2024 by mr-eyes
Fastmultigather --save-matches sig name to be identifier only
#425 opened Aug 17, 2024 by mr-eyes
benchmarks: search vs multisearch
#421 opened Aug 15, 2024 by ctb
can we (optionally) obtain full info from RocksDB indexes when using manysearch?
#418 opened Aug 12, 2024 by ctb
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