FaceOff

ANTs-based commandline utility to deface anatomical MRI images and optionally, depad the images off dielectric pads (7 T specific).

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A sub-set of the OASIS ANTs template files are used. The complete ANTs OASIS Template and Priors can be found here:
Source: https://ndownloader.figshare.com/files/3133832\

If you use this template, please cite:
Avants, Brian; Tustison, Nick (2018): ANTs/ANTsR Brain Templates. figshare. Dataset. https://doi.org/10.6084/m9.figshare.915436.v2

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How-To:

Make sure everything is findable

echo "export PATH=$PATH:/path/to/faceoff" >> ~/.bashrc

Example use

FaceOff -i sub-01-mp2rage-t1w.nii.gz -n 12

Before

After