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U-Net based skeletonization and bag of tricks

This repo is the offical implementation for the paper "U-Net based skeletonization and bag of tricks" in the Pixel SkelNetOn Challenge in the "Deep Learning for Geometric Computing" workshop at ICCV 2021

1. Introduction

Our solution includes:

  1. The modification of U-Net architecture using the attention mechanism.
  2. Auxiliary task learning for a more effective training process.
  3. Tricks for improving the skeletonization model's performance.

2. Installation

  1. Clone https://github.com/namdvt/skeletonization
  2. python 3, cv2, pytorch > 1.2

3. Training & Testing

  1. Place the SkelNetOn dataset into 'dataset/Starting Kit Pixel/'
  2. Check config in "configs/unet_att.yaml"
  3. Run the command to train test the model
python main.py

4. Competition results

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Skeletonization of neural dendrites

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