TACA Aviti integration: aggregate demultiplexing results #42
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Lint code | |
on: [push, pull_request] | |
jobs: | |
# Use ruff to check for code style violations | |
ruff-check: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ruff | |
- name: ruff --> Check for style violations | |
# Configured in pyproject.toml | |
run: ruff check . | |
# Use ruff to check code formatting | |
ruff-format: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ruff | |
- name: ruff --> Check code formatting | |
run: ruff format --check . | |
# Use mypy for static type checking | |
mypy-check: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install mypy | |
# Start by installing type stubs | |
- name: mypy --> Install stubs | |
run: echo -e "y" | mypy --install-types . || exit 0 | |
- name: mypy --> Static type checking | |
# Configured in pyprojet.toml | |
run: mypy . | |
# Use pipreqs to check for missing dependencies | |
pipreqs-check: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
pip install -r requirements-dev.txt | |
- name: Run pipreqs | |
run: | | |
pipreqs --savepath pipreqs.txt taca 2>&1 | tee pipreqs_output.log | |
if grep -q 'WARNING: Package .* does not exist or network problems' pipreqs_output.log; then | |
missing_packages=$(grep 'WARNING: Package .* does not exist or network problems' pipreqs_output.log | sed -E 's/.*Package "(.*)" does not exist.*/\1/') | |
echo "ERROR: Add unresolved packages to requirements. Missing package(s): $missing_packages. Example: '<pkg> @ git+https://github.com/<author>/<repo>.git'" | |
exit 1 | |
fi | |
- name: Compare requirements | |
run: | | |
# Extract and sort package names | |
awk -F'(=|==|>|>=|<|<=| @ )' '{print $1}' requirements.txt | tr '[:upper:]' '[:lower:]' | sort -u > requirements.compare | |
awk -F'(=|==|>|>=|<|<=| @ )' '{print $1}' pipreqs.txt | tr '[:upper:]' '[:lower:]' | sort -u > pipreqs.compare | |
# Compare package lists | |
if cmp -s requirements.compare pipreqs.compare | |
then | |
echo "Requirements are the same" | |
exit 0 | |
else | |
echo "Requirements are different" | |
echo "" | |
echo "=== current requirements.txt ===" | |
echo "" | |
cat requirements.compare | |
echo "" | |
echo "=== pipreqs requirements ===" | |
echo "" | |
cat pipreqs.compare | |
exit 1 | |
fi | |
# Use Prettier to check various file formats | |
prettier: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Setup node | |
uses: actions/setup-node@v4 | |
with: | |
node-version: "20" | |
- name: Install Prettier | |
run: npm install -g prettier | |
- name: Run Prettier --check | |
run: prettier --check . |