Initial checkpointing support #1075

feldergast · 2024-05-09T15:21:05Z

Initial checkpointing support

Currently only supports serial runs
Updates to serialization to support checkpointing
- Added ability to turn on pointer tracking
- Added ability to serialize non-pointer variables, but track address of data as a pointer.
Changed templating for handlers to support checkpointing
- Function pointer is now a non-type template parameter
Added additional serialization tests and new checkpointing tests
Added a function to ConfigBase so you could query whether or not an option was set on the command line.

Other incidental changes:

Remove old references to SharedRegion
Removed type checking in testing comparison filters. This was done because the filter is called for every line of output and the type checks apparently aren't very efficient and were a performance bottleneck for tests with a lot of output
Added Python Module output to sst-info
Added fflush to all output in TraceFunction

- Currently only supports serial runs - Updates to serialization to support checkpointing - Added ability to turn on pointer tracking - Added ability to serialize non-pointer variables, but track address of data as a pointer. - Changed templating for handlers to support checkpointing - Function pointer is now a non-type template parameter - Added additional serialization tests and new checkpointing tests - Added a function to ConfigBase so you could query whether or not an option was set on the command line. Other incidental changes: - Remove old references to SharedRegion - Removed type checking in testing comparison filters. This was done because the filter is called for every line of output and the type checks apparently aren't very efficient and were a performance bottleneck for tests with a lot of output - Added Python Module output to sst-info - Added fflush to all output in TraceFunction

github-actions · 2024-05-09T15:21:33Z

CMAKE-FORMAT TEST - PASSED

github-actions · 2024-05-09T15:21:46Z

CLANG-FORMAT TEST - PASSED

jmlapre

Everything looks OK. I would maybe add a comment here to make it clear that checkpointing is only supported within a single machine or at least not across two different architectures.

github-actions · 2024-05-09T18:31:59Z

CLANG-FORMAT TEST - PASSED

github-actions · 2024-05-09T18:32:03Z

CMAKE-FORMAT TEST - PASSED

sst-autotester · 2024-05-09T18:48:55Z

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sst-autotester · 2024-05-09T20:10:27Z

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github-actions · 2024-05-10T16:32:44Z

CLANG-FORMAT TEST - PASSED

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CMAKE-FORMAT TEST - PASSED

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sst-autotester · 2024-05-10T18:11:57Z

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Test Results

Test Name	Status
test_Checkpoint	SKIPPED
test_Checkpoint_Module	SKIPPED
test_Checkpoint_SharedObject_array	SKIPPED
test_Checkpoint_SharedObject_bool_array	SKIPPED
test_Checkpoint_SharedObject_map	SKIPPED
test_Checkpoint_SharedObject_set	SKIPPED
test_Checkpoint_SubComponent_sc_2a	SKIPPED
test_Checkpoint_SubComponent_sc_2u2u	SKIPPED
test_Checkpoint_sc_2u	SKIPPED
test_Checkpoint_sc_2u2a	SKIPPED
test_Checkpoint_sc_2ua	SKIPPED
test_Checkpoint_sc_2uu	SKIPPED
test_Checkpoint_sc_a	SKIPPED
test_Checkpoint_sc_u	SKIPPED
test_Checkpoint_sc_u2a	SKIPPED
test_Checkpoint_sc_u2u	SKIPPED
test_Checkpoint_sc_ua	SKIPPED
test_Checkpoint_sc_uu	SKIPPED
test_Ariel_test_snb	SKIPPED
test_MemPool_overflow	SKIPPED
test_Sirius_Zodiac_27	SKIPPED
test_cacheTracer_2	SKIPPED
test_json_io_parallel	FAILED
test_python_io_parallel	FAILED
test_miranda_randomgen	SKIPPED
test_miranda_singlestream	SKIPPED
test_rdmaNic_short_tests_001_app_rdma_msg	SKIPPED
test_rdmaNic_short_tests_002_app_mpi_IMB_MPI1	SKIPPED
test_sstexternalelement_001	SKIPPED
test_vanadis_short_tests_001_small_basic_io_lseek_riscv64_	SKIPPED
test_vanadis_short_tests_002_small_basic_io_hello_world_mipsel_	SKIPPED
test_vanadis_short_tests_003_small_basic_io_hello_world_riscv64_	SKIPPED
test_vanadis_short_tests_004_small_basic_io_hello_world_cpp_mipsel_	SKIPPED
test_vanadis_short_tests_005_small_basic_io_hello_world_cpp_riscv64_	SKIPPED
test_vanadis_short_tests_006_small_basic_io_printf_check_mipsel_	SKIPPED
test_vanadis_short_tests_007_small_basic_io_printf_check_riscv64_	SKIPPED
test_vanadis_short_tests_008_small_basic_io_openat_mipsel_	SKIPPED
test_vanadis_short_tests_009_small_basic_io_openat_riscv64_	SKIPPED
test_vanadis_short_tests_010_small_basic_io_read_write_mipsel_	SKIPPED
test_vanadis_short_tests_011_small_basic_io_read_write_riscv64_	SKIPPED
test_vanadis_short_tests_012_small_basic_io_unlink_mipsel_	SKIPPED
test_vanadis_short_tests_013_small_basic_io_unlink_riscv64_	SKIPPED
test_vanadis_short_tests_014_small_basic_io_unlinkat_mipsel_	SKIPPED
test_vanadis_short_tests_015_small_basic_io_unlinkat_riscv64_	SKIPPED
test_vanadis_short_tests_016_small_basic_io_fread_fwrite_mipsel_	SKIPPED
test_vanadis_short_tests_017_small_basic_io_fread_fwrite_riscv64_	SKIPPED
test_vanadis_short_tests_018_small_basic_math_sqrt_double_mipsel_	SKIPPED
test_vanadis_short_tests_019_small_basic_math_sqrt_double_riscv64_	SKIPPED
test_vanadis_short_tests_020_small_basic_math_sqrt_float_mipsel_	SKIPPED
test_vanadis_short_tests_021_small_basic_math_sqrt_float_riscv64_	SKIPPED
test_vanadis_short_tests_022_small_basic_ops_test_branch_mipsel_	SKIPPED
test_vanadis_short_tests_023_small_basic_ops_test_branch_riscv64_	SKIPPED
test_vanadis_short_tests_024_small_basic_ops_test_shift_mipsel_	SKIPPED
test_vanadis_short_tests_025_small_basic_ops_test_shift_riscv64_	SKIPPED
test_vanadis_short_tests_026_small_misc_stream_mipsel_	SKIPPED
test_vanadis_short_tests_027_small_misc_stream_riscv64_	SKIPPED
test_vanadis_short_tests_028_small_misc_gettime_mipsel_	SKIPPED
test_vanadis_short_tests_029_small_misc_gettime_riscv64_	SKIPPED
test_vanadis_short_tests_030_small_misc_splitLoad_mipsel_	SKIPPED
test_vanadis_short_tests_031_small_misc_splitLoad_riscv64_	SKIPPED
test_vanadis_short_tests_032_small_misc_mt_dgemm_mipsel_	SKIPPED
test_vanadis_short_tests_033_small_misc_mt_dgemm_riscv64_	SKIPPED
test_vanadis_short_tests_034_small_misc_stream_fortran_mipsel_	SKIPPED
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Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-elements_MT-2

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URL: Jenkins server at https://sst-jenkins.sandia.gov/view/SST/job/SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-elements_MT-2/1392/consoleFull

Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-macro_withsstcore

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Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-core

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Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-core_Make-Dist

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Job: SST__AutotestGen2_NewFW_OSX-13.2-XC14-ARM_OMPI-4.1.4_PY3.10_sst-elements

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Job: SST__AutotestGen2_NewFW_OSX-13.2-XC14-ARM_OMPI-4.1.4_PY3.10_sst-macro_withsstcore

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github-actions · 2024-05-10T19:33:01Z

CLANG-FORMAT TEST - PASSED

github-actions · 2024-05-10T19:33:03Z

CMAKE-FORMAT TEST - PASSED

sst-autotester · 2024-05-10T19:38:27Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

sst-autotester · 2024-05-10T19:44:24Z

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Status: STARTED

Using Repos:

Repo: CORE (feldergast/sst-core)

Repo: SQE (sstsimulator/sst-sqe)

Repo: ELEMENTS (sstsimulator/sst-elements)

Repo: MACRO (sstsimulator/sst-macro)

Pull Request Author: feldergast

sst-autotester · 2024-05-10T20:59:42Z

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Build Num: 201
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sst-autotester · 2024-05-10T20:59:59Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

sst-autotester · 2024-05-10T21:00:05Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

jmlapre

quick review

sst-autotester · 2024-05-10T21:48:55Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ jmlapre ]!

sst-autotester · 2024-05-10T21:49:01Z

Status Flag 'Pull Request AutoTester' - Pull Request MUST BE MERGED MANUALLY BY Project Team - Forked Repos cannot Automerge

Requested changes were made and another review was done by a second reviewer.

Initial checkpointing support. - Currently only supports serial runs - Updates to serialization to support checkpointing - Added ability to turn on pointer tracking - Added ability to serialize non-pointer variables, but track address of data as a pointer. - Changed templating for handlers to support checkpointing - Function pointer is now a non-type template parameter - Added additional serialization tests and new checkpointing tests - Added a function to ConfigBase so you could query whether or not an option was set on the command line. Other incidental changes: - Remove old references to SharedRegion - Removed type checking in testing comparison filters. This was done because the filter is called for every line of output and the type checks apparently aren't very efficient and were a performance bottleneck for tests with a lot of output - Added Python Module output to sst-info - Added fflush to all output in TraceFunction --------- Co-authored-by: Gwen <grvosku@sandia.gov>

feldergast added SST-Core Major Feature A new feature that has broad impact on codebase and requires a minimum two week discussion period labels May 9, 2024

feldergast requested review from jpkenny and jmlapre May 9, 2024 15:21

feldergast self-assigned this May 9, 2024

github-actions bot added AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) AT: CMAKE-FORMAT PASS and removed AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) labels May 9, 2024

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feldergast added the AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) label May 9, 2024

jmlapre previously approved these changes May 9, 2024

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feldergast removed the AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) label May 9, 2024

Fix initialization of SharedObject Data

34727aa

gvoskuilen dismissed jmlapre’s stale review via 34727aa May 9, 2024 18:31

github-actions bot added AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) and removed AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) labels May 9, 2024

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Cleanup and formatting

7df1a2e

github-actions bot added AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) and removed AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) labels May 10, 2024

Moved file name formatting for parallel load multi.

abbbe25

github-actions bot added AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) and removed AT: WIP Mark PR as a Work in Progress (No Autotesting Performed) labels May 10, 2024

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feldergast merged commit 38f6b71 into sstsimulator:devel May 10, 2024
7 checks passed

berquist added this to the SST V14.0.0 milestone Oct 3, 2024

Initial checkpointing support #1075

Initial checkpointing support #1075

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Using Repos:

sst-autotester commented May 9, 2024

Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-elements

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Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-elements_MT-2

Job: SST__AutotestGen2_NewFW_sst-test_OMPI-4.1.4_PY3.6_sst-macro_withsstcore

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Job: SST__AutotestGen2_NewFW_OSX-13.2-XC14-ARM_OMPI-4.1.4_PY3.10_sst-elements

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sst-autotester commented May 10, 2024

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sst-autotester commented May 10, 2024

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