Multiple assemblers were run (canu, flye, raven) and best assembly chosen based on [asm_stats.tsv] results. This template setup for running multiple samples is per the Stajich lab setup for running assembly and annotation.
See the [pipeline] folder for assembly, annotation, and statistics calculations.
Notes:
- final assembly files used are called XX.pilon.fasta but the polishing step was actually POLCA used
- scaffold_10 was removed based on its identity to the subset of a match to scaffold_6