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Refactor unconstraining to use deserializer interface #872

Merged
merged 54 commits into from
Aug 13, 2021
Merged

Refactor unconstraining to use deserializer interface #872

merged 54 commits into from
Aug 13, 2021

Commits on Apr 5, 2021

  1. WIP; First pass at unconstrain refactor for deserializer

    @rybern
    rybern committed Apr 5, 2021
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Commits on Apr 6, 2021

  1. make the transform_inits() API to work with the new impl

    @SteveBronder
    SteveBronder committed Apr 6, 2021
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  2. Use serializer.write instead of var__.emplace_back in transform_inits… 

    …_impl
    @rybern
    rybern committed Apr 6, 2021
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  3. Add (commented) code to replace vars__.emplace_back with serializer.w… 

    …rite in write_array
    @rybern
    rybern committed Apr 6, 2021
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  4. Change initialization of decay_t in transform_inits

    @rybern
    rybern committed Apr 6, 2021
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  5. use serialize in write_array()

    @SteveBronder
    SteveBronder committed Apr 6, 2021
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Commits on Apr 7, 2021

  1. Don't inline deserializer calls in transform_inits

    @rybern
    rybern committed Apr 7, 2021
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  2. Code cleanup

    @rybern
    rybern committed Apr 7, 2021
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  3. update to master

    @SteveBronder
    SteveBronder committed Apr 7, 2021
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Commits on Apr 12, 2021

  1. Do unconstrain in writes rather than reads

    @rybern
    rybern committed Apr 12, 2021
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  2. Remove dimensions from serializer reads with Identity constraints

    @rybern
    rybern committed Apr 12, 2021
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  3. Structured reads/writes, but optimization doesn't find exprs

    @rybern
    rybern committed Apr 12, 2021
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Commits on Apr 13, 2021

  1. Include dimensions in serializer reads

    @rybern
    rybern committed Apr 13, 2021
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Commits on Apr 21, 2021

  1. update to master

    @SteveBronder
    SteveBronder committed Apr 21, 2021
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Commits on Apr 23, 2021

  1. Give transformations their own module to avoid circular dependencies

    @rybern
    rybern committed Apr 23, 2021
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  2. Merge structured internal functions

    @rybern
    rybern committed Apr 23, 2021
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  3. Use transformations in internal functions; move transform codegen log… 

    …ic to codegen
    @rybern
    rybern committed Apr 23, 2021
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  4. Pass transformation to FnCheck to handle in backend instead of ast_to… 

    …_mir
    @rybern
    rybern committed Apr 23, 2021
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  5. Update optimizations' side effecting exprs and to find exprs in inter… 

    …nal_funs
    @rybern
    rybern committed Apr 23, 2021
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  6. Cleanup constraint generation code

    @rybern
    rybern committed Apr 23, 2021
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  7. Merge back into unconstrain branch

    @rybern
    rybern committed Apr 23, 2021
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  8. Merge branch 'unconstrain-refactor' of github.com:rybern/stanc3 into … 

    …unconstrain-refactor
    @rybern
    rybern committed Apr 23, 2021
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  9. Merge structured internal functions

    @rybern
    rybern committed Apr 23, 2021
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Commits on Apr 24, 2021

  1. Add optimization util test

    @rybern
    rybern committed Apr 24, 2021
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  2. Fix optimizations with structured internal_fns

    @rybern
    rybern committed Apr 24, 2021
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  3. Change name of Transformations.t to follow convention

    @rybern
    rybern committed Apr 24, 2021
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  4. Adding Transformation module to avoid cyclic dependency

    @rybern
    rybern committed Apr 24, 2021
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Commits on Apr 27, 2021

  1. update expected tests

    @SteveBronder
    SteveBronder committed Apr 27, 2021
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Commits on Apr 28, 2021

  1. remove dims from write to serializer

    @SteveBronder
    SteveBronder committed Apr 28, 2021
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  2. dune format

    @SteveBronder
    SteveBronder committed Apr 28, 2021
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  3. adds back all dimensions for when transform_inits does the read from … 

    …the deserializer, aka ignoring constrains
    @SteveBronder
    SteveBronder committed Apr 28, 2021
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  4. Merge remote-tracking branch 'upstream/master' into HEAD

    @SteveBronder
    SteveBronder committed Apr 28, 2021
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  5. Remove dimensions from serializer.write calls

    @rybern
    rybern committed Apr 28, 2021
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  6. Remove dimensions from serializer.write calls

    @rybern
    rybern committed Apr 28, 2021
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  7. fix non-impl transform_inits body to construct instead of reserve the… 

    … memory
    @SteveBronder
    SteveBronder committed Apr 28, 2021
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Commits on May 5, 2021

  1. Initialize vars_vec with size to hold transformed and genquant vars

    @rybern
    rybern committed May 5, 2021
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  2. add quantile signatures

    @adamhaber @rybern
    adamhaber authored and rybern committed May 5, 2021
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  3. add test model

    @adamhaber @rybern
    adamhaber authored and rybern committed May 5, 2021
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  4. dune promote

    @adamhaber @rybern
    adamhaber authored and rybern committed May 5, 2021
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  5. Revert "Add quantile signatures"

    @rok-cesnovar @rybern
    rok-cesnovar authored and rybern committed May 5, 2021
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  6. fix stanc copy

    @rok-cesnovar @rybern
    rok-cesnovar authored and rybern committed May 5, 2021
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  7. update name of num_params to num_params_r__

    @SteveBronder @rybern
    SteveBronder authored and rybern committed May 5, 2021
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Commits on May 7, 2021

  1. fix sizes for std::vector write_array

    @SteveBronder
    SteveBronder committed May 7, 2021
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Commits on May 14, 2021

  1. merge master

    @rybern
    rybern committed May 14, 2021
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  2. format

    @SteveBronder
    SteveBronder committed May 14, 2021
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Commits on May 20, 2021

  1. Array params now read from row-major to col-major in transform_inits.… 

    … Also updated mkfor interface, added array type util
    @rybern
    rybern committed May 20, 2021
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  2. Merge remote-tracking branch 'upstream/master' into HEAD

    @SteveBronder
    SteveBronder committed May 20, 2021
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Commits on May 21, 2021

  1. update ode expect tests

    @SteveBronder
    SteveBronder committed May 21, 2021
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Commits on May 25, 2021

  1. update size of write_array serialized vector

    @SteveBronder
    SteveBronder committed May 25, 2021
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  2. force clean all before building cmdstan

    @SteveBronder
    SteveBronder committed May 25, 2021
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  3. turn off precompiled headers for jenkins

    @SteveBronder
    SteveBronder committed May 25, 2021
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Commits on Aug 11, 2021

  1. update to master

    @SteveBronder
    SteveBronder committed Aug 11, 2021
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  2. fix Jenkinsfile

    @SteveBronder
    SteveBronder committed Aug 11, 2021
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  3. use loop instead to handle column major to row major in transform_inits

    @SteveBronder
    SteveBronder committed Aug 11, 2021
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