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Is there any example using demuxlet with scRNA-seq platforms other than 10x? #94

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kohjy2000 opened this issue Jul 18, 2022 · 1 comment

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@kohjy2000
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I need to use a demuxlet to demultiplex the data generated by BD Rhapsody platform.
I checked the --tag-umi and --tag-group formats of the data generated by Bhapsody,
but I don't know how to enter the input in the options.

Can you give me an example?

Thank you for your cooperation.

@leqi0001
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This is very late but --tag-umi MA should work for Rhapsody. However, I do notice that the run is extremely slow with this tag present. We're talking about >10-fold slower. I'm wondering if there's a reason for this. It doesn't seem to affect 10x files as much.

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