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v1.0.0

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@jonathonl jonathonl released this 28 Apr 19:57
· 272 commits to develop since this release

Release Notes

  • Adds more graceful failures with invalid input.
  • Adds cpack packaging.
  • Changes fmt enum names (breaking change).
  • Adds method for retrieving position range from s1r index.
  • Adds uuid and file level ploidy to SAV.
  • Adds variant_group_iterator.
  • Adds region::merge.
  • Fixes chromosome name queries from vcf files.
  • Adds bgzf compression to sav export.
  • Adds --bounding-point to sav and updates enum names.
  • Adds regions-file support to sav import/export.
  • Fixes reset_region for vcf reader.
  • Fixes bad vs eof logic in SAV readers.
  • Adds stat-index sub-command to sav.
  • Prevents fileformat header from being written to SAV format.
  • Adds genotype matrix example.
  • Removes dependency on size() method for vector classes.
  • Prefers linking to static when BUILD_SHARED_LIBS is off.
  • Adds support for exporting GP from SAV.
  • Adds support for VCF writing of genotype probabilities.