Error thrown on sudo docker-compose up -d && docker-compose logs -f: docker.errors.DockerException: Error while fetching server API version #848

gterseglav · 2023-02-04T23:13:18Z

gterseglav
Feb 4, 2023

Hello.

I am trying to run stellio context broker and I get some errors (on tag v2.0.0).
OS: Ubuntu 22.10

Steps to reproduce:

git clone git@github.com:stellio-hub/stellio-context-broker.git
cd stellio-context-broker
git checkout v2.0.0
docker-compose up -d && docker-compose logs -f

WARNING: Found orphan containers (stellio-neo4j, stellio-zookeeper) for this project. If you removed or renamed this service in your compose file, you can run this command with the --remove-orphans flag to clean it up.
stellio-api-gateway is up-to-date
Recreating stellio-postgres ... done
Recreating stellio-kafka    ... done
Recreating stellio-search-service       ... done
Recreating stellio-subscription-service ... done
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 704, in urlopen
    httplib_response = self._make_request(
  File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 399, in _make_request
    conn.request(method, url, **httplib_request_kw)
  File "/usr/lib/python3.10/http/client.py", line 1282, in request
    self._send_request(method, url, body, headers, encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1328, in _send_request
    self.endheaders(body, encode_chunked=encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1277, in endheaders
    self._send_output(message_body, encode_chunked=encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1037, in _send_output
    self.send(msg)
  File "/usr/lib/python3.10/http/client.py", line 975, in send
    self.connect()
  File "/usr/lib/python3/dist-packages/docker/transport/unixconn.py", line 30, in connect
    sock.connect(self.unix_socket)
PermissionError: [Errno 13] Permission denied

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/requests/adapters.py", line 440, in send
    resp = conn.urlopen(
  File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 786, in urlopen
    retries = retries.increment(
  File "/usr/lib/python3/dist-packages/urllib3/util/retry.py", line 550, in increment
    raise six.reraise(type(error), error, _stacktrace)
  File "/usr/lib/python3/dist-packages/six.py", line 718, in reraise
    raise value.with_traceback(tb)
  File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 704, in urlopen
    httplib_response = self._make_request(
  File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 399, in _make_request
    conn.request(method, url, **httplib_request_kw)
  File "/usr/lib/python3.10/http/client.py", line 1282, in request
    self._send_request(method, url, body, headers, encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1328, in _send_request
    self.endheaders(body, encode_chunked=encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1277, in endheaders
    self._send_output(message_body, encode_chunked=encode_chunked)
  File "/usr/lib/python3.10/http/client.py", line 1037, in _send_output
    self.send(msg)
  File "/usr/lib/python3.10/http/client.py", line 975, in send
    self.connect()
  File "/usr/lib/python3/dist-packages/docker/transport/unixconn.py", line 30, in connect
    sock.connect(self.unix_socket)
urllib3.exceptions.ProtocolError: ('Connection aborted.', PermissionError(13, 'Permission denied'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 214, in _retrieve_server_version
    return self.version(api_version=False)["ApiVersion"]
  File "/usr/lib/python3/dist-packages/docker/api/daemon.py", line 181, in version
    return self._result(self._get(url), json=True)
  File "/usr/lib/python3/dist-packages/docker/utils/decorators.py", line 46, in inner
    return f(self, *args, **kwargs)
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 237, in _get
    return self.get(url, **self._set_request_timeout(kwargs))
  File "/usr/lib/python3/dist-packages/requests/sessions.py", line 542, in get
    return self.request('GET', url, **kwargs)
  File "/usr/lib/python3/dist-packages/requests/sessions.py", line 529, in request
    resp = self.send(prep, **send_kwargs)
  File "/usr/lib/python3/dist-packages/requests/sessions.py", line 645, in send
    r = adapter.send(request, **kwargs)
  File "/usr/lib/python3/dist-packages/requests/adapters.py", line 501, in send
    raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', PermissionError(13, 'Permission denied'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/bin/docker-compose", line 33, in <module>
    sys.exit(load_entry_point('docker-compose==1.29.2', 'console_scripts', 'docker-compose')())
  File "/usr/lib/python3/dist-packages/compose/cli/main.py", line 81, in main
    command_func()
  File "/usr/lib/python3/dist-packages/compose/cli/main.py", line 200, in perform_command
    project = project_from_options('.', options)
  File "/usr/lib/python3/dist-packages/compose/cli/command.py", line 60, in project_from_options
    return get_project(
  File "/usr/lib/python3/dist-packages/compose/cli/command.py", line 152, in get_project
    client = get_client(
  File "/usr/lib/python3/dist-packages/compose/cli/docker_client.py", line 41, in get_client
    client = docker_client(
  File "/usr/lib/python3/dist-packages/compose/cli/docker_client.py", line 170, in docker_client
    client = APIClient(use_ssh_client=not use_paramiko_ssh, **kwargs)
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 197, in __init__
    self._version = self._retrieve_server_version()
  File "/usr/lib/python3/dist-packages/docker/api/client.py", line 221, in _retrieve_server_version
    raise DockerException(
docker.errors.DockerException: Error while fetching server API version: ('Connection aborted.', PermissionError(13, 'Permission denied'))```

Answered by gterseglav

Feb 5, 2023

Thanks for your information.

The reason why I used sudo with docker-compose was that I got same exception, if I tried to execute it with normal user.

I solved this by adding user to docker group:

$ sudo usermod -aG docker myusername
$ less /etc/group | grep docker
docker:x:996:myusername
$ reboot

With this config update the error with PermissionError: [Errno 13] Permission denied is resolved and I can run docker with normal user:

$ docker-compose down -v
Removing network stellio-context-broker_default
WARNING: Network stellio-context-broker_default not found.
Removing volume stellio-context-broker_stellio-postgres-storage
$ git checkout 2.0.0
HEAD is now at 2fb5f43d conf: update version …

View full answer

gterseglav · 2023-02-04T23:15:31Z

gterseglav
Feb 4, 2023
Author

When I try to repeat the same procedure on tag v1.13.2, the following error is thrown:

git checkout v1.13.2
sudo docker-compose up -d && docker-compose logs -f 

WARNING: Found orphan containers (stellio-zookeeper) for this project. If you removed or renamed this service in your compose file, you can run this command with the --remove-orphans flag to clean it up.
Pulling kafka (confluentinc/cp-kafka:7.2.0)...
7.2.0: Pulling from confluentinc/cp-kafka
1e09a5ee0038: Pull complete
0d725b91398e: Pull complete
7ffa775899a6: Pull complete
84d31282528a: Pull complete
94a62d8a8582: Pull complete
9845d7c60dd6: Pull complete
f2ce4d4b7499: Pull complete
d988e2f09e30: Pull complete
ff7067f19a18: Pull complete
4bbb18a80566: Pull complete
1b18098365a3: Pull complete
Digest: sha256:0a049a17d4f9f925804882d6eef9950fcb80ee84a853d6d5b1d624d7a739167b
Status: Downloaded newer image for confluentinc/cp-kafka:7.2.0
Recreating stellio-postgres ... 
Recreating stellio-postgres ... done
Recreating stellio-kafka    ... done
Starting stellio-neo4j      ... done
Recreating stellio-subscription-service ... done
Recreating stellio-search-service       ... done

ERROR: for entity-service  Container "6d4f26c4108c" is unhealthy.
ERROR: Encountered errors while bringing up the project.

0 replies

bobeal · 2023-02-05T09:20:06Z

bobeal
Feb 5, 2023
Maintainer

Hello,

A few points:

Seems like you are sometimes running the containers as root, and sometimes not. This probably causes the permission denied errors. As a good practice, never run the containers as root.
If you don't have existing data that you want to preserve, I suggest that you restart from scratch by doing first a docker-compose down -v (it will remove all containers, volumes and networks!)
Before launching the Docker compose config, ensure you are running the 2.0.0 version (check the STELLIO_DOCKER_TAG environment variable in the .env file)

0 replies

gterseglav · 2023-02-05T18:43:12Z

gterseglav
Feb 5, 2023
Author

Thanks for your information.

The reason why I used sudo with docker-compose was that I got same exception, if I tried to execute it with normal user.

I solved this by adding user to docker group:

$ sudo usermod -aG docker myusername
$ less /etc/group | grep docker
docker:x:996:myusername
$ reboot

With this config update the error with PermissionError: [Errno 13] Permission denied is resolved and I can run docker with normal user:

$ docker-compose down -v
Removing network stellio-context-broker_default
WARNING: Network stellio-context-broker_default not found.
Removing volume stellio-context-broker_stellio-postgres-storage
$ git checkout 2.0.0
HEAD is now at 2fb5f43d conf: update version to 2.0.0
$ git status
HEAD detached at 2.0.0
nothing to commit, working tree clean
$ less .env | grep STELLIO_DOCKER_TAG
STELLIO_DOCKER_TAG=dev
$ docker-compose up -d && docker-compose logs -f

Please not that STELLIO_DOCKER_TAG in .env file is set to dev for tag 2.0.0.

1 reply

bobeal Feb 5, 2023
Maintainer

Good point for the value of STELLIO_DOCKER_TAG, I fixed it yesterday on master

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Error thrown on sudo docker-compose up -d && docker-compose logs -f: docker.errors.DockerException: Error while fetching server API version #848

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Error thrown on sudo docker-compose up -d && docker-compose logs -f: docker.errors.DockerException: Error while fetching server API version #848

gterseglav Feb 4, 2023

Replies: 3 comments · 1 reply

gterseglav Feb 4, 2023 Author

bobeal Feb 5, 2023 Maintainer

gterseglav Feb 5, 2023 Author

bobeal Feb 5, 2023 Maintainer

gterseglav
Feb 4, 2023

Replies: 3 comments 1 reply

gterseglav
Feb 4, 2023
Author

bobeal
Feb 5, 2023
Maintainer

gterseglav
Feb 5, 2023
Author

bobeal Feb 5, 2023
Maintainer