Merge pull request #12 from stjude/mp-stitchdistance

Update ROSE_main.py
stjude · Jan 21, 2022 · 73a6220 · 73a6220
2 parents b47150f + d0b49ea
commit 73a6220
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/ROSE_main.py b/bin/ROSE_main.py
@@ -236,7 +236,7 @@ def main():
                       help = "Enter a comma separated list of additional bam files to map to")
     parser.add_option("-c","--control", dest="control",nargs = 1, default=None,
                       help = "bamfile to rank enhancer by")
-    parser.add_option("-s","--stitch", dest="stitch",nargs = 1, default=5000,
+    parser.add_option("-s","--stitch", dest="stitch",nargs = 1, default=12500,
                       help = "Enter a max linking distance for stitching")
     parser.add_option("-t","--tss", dest="tss",nargs = 1, default=0,
                       help = "Enter a distance from TSS to exclude. 0 = no TSS exclusion")