chore: bump to v1.2.0 #35
Workflow file for this run
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| name: diff_check | |
| on: | |
| push: | |
| jobs: | |
| concordance-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Check | |
| run: | | |
| EXITCODE=0 | |
| for subdir in warden_bam/resources/app_data/internal_source/*; do | |
| if [ "$(basename "$subdir")" = "warden_genome_coverage_bed" ]; then | |
| continue | |
| fi | |
| echo "Checking WARDEN (BAM): $(basename "$subdir")" | |
| result=$(diff -r -q "$subdir" warden_fastq/resources/app_data/internal_source/"$(basename "$subdir")") || true | |
| if [[ -n "$result" ]]; then | |
| echo "$result" | |
| EXITCODE=1 | |
| fi | |
| done | |
| for subdir in warden_counts/resources/app_data/internal_source/*; do | |
| echo "Checking WARDEN (counts): $(basename "$subdir")" | |
| result=$(diff -r -q "$subdir" warden_fastq/resources/app_data/internal_source/"$(basename "$subdir")") || true | |
| if [[ -n "$result" ]]; then | |
| echo "$result" | |
| EXITCODE=1 | |
| fi | |
| done | |
| exit $EXITCODE |