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Update gatk4.wdl

Update gatk4.wdl #504

Triggered via push November 11, 2024 20:16
Status Failure
Total duration 1m 13s
Artifacts

pytest.yaml

on: push
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Matrix: pytest_check
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42 errors
pytest_check (multiqc)
Process completed with exit code 1.
pytest_check (estimate)
The job was canceled because "multiqc" failed.
pytest_check (fastqc)
The job was canceled because "multiqc" failed.
pytest_check (fastqc)
The operation was canceled.
pytest_check (util)
The job was canceled because "multiqc" failed.
pytest_check (util)
The operation was canceled.
pytest_check (mosdepth)
The job was canceled because "multiqc" failed.
pytest_check (mosdepth)
The operation was canceled.
pytest_check (md5sum)
The job was canceled because "multiqc" failed.
pytest_check (md5sum)
The operation was canceled.
pytest_check (fq)
The job was canceled because "multiqc" failed.
pytest_check (fq)
The operation was canceled.
pytest_check (samtools)
The job was canceled because "multiqc" failed.
pytest_check (samtools)
The operation was canceled.
pytest_check (flag_filter)
The job was canceled because "multiqc" failed.
pytest_check (flag_filter)
The operation was canceled.
pytest_check (kraken)
The job was canceled because "multiqc" failed.
pytest_check (kraken)
The operation was canceled.
pytest_check (deeptools)
The job was canceled because "multiqc" failed.
pytest_check (deeptools)
The operation was canceled.
pytest_check (picard)
The job was canceled because "multiqc" failed.
pytest_check (picard)
The operation was canceled.
pytest_check (star)
The job was canceled because "multiqc" failed.
pytest_check (star)
The operation was canceled.
pytest_check (read_group)
The job was canceled because "multiqc" failed.
pytest_check (read_group)
The operation was canceled.
pytest_check (ngsderive)
The job was canceled because "multiqc" failed.
pytest_check (ngsderive)
The operation was canceled.
pytest_check (arriba)
The job was canceled because "multiqc" failed.
pytest_check (arriba)
The operation was canceled.
pytest_check (htseq)
The job was canceled because "multiqc" failed.
pytest_check (htseq)
The operation was canceled.
pytest_check (qualimap)
The job was canceled because "multiqc" failed.
pytest_check (qualimap)
The operation was canceled.
pytest_check (bwa)
The job was canceled because "multiqc" failed.
pytest_check (bwa)
The operation was canceled.
pytest_check (sambamba)
The job was canceled because "multiqc" failed.
pytest_check (gatk4)
The job was canceled because "multiqc" failed.
pytest_check (sambamba)
The operation was canceled.
pytest_check (gatk4)
The operation was canceled.
pytest_check (librarian)
The job was canceled because "multiqc" failed.
pytest_check (librarian)
The operation was canceled.