chore: fix miniwdl check

stjudecloud · Oct 28, 2024 · e837f8a · e837f8a
1 parent 275c5d8
commit e837f8a
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/workflows/hic/hicpro-core.wdl b/workflows/hic/hicpro-core.wdl
@@ -149,7 +149,7 @@ workflow hicpro_core {
                 bowtie_db_tar_gz,
                 read_one_fastq_gz = pair.left,
                 prefix = fq_prefix + ".R1_global",
-                rg = tuple.right,
+                read_group = tuple.right,
                 write_unpaired_unaligned = true,
                 seed_substring = 30,  # -L
                 score_min = {
@@ -174,7 +174,7 @@ workflow hicpro_core {
                 bowtie_db_tar_gz,
                 read_one_fastq_gz = pair.right,
                 prefix = fq_prefix + ".R2_global",
-                rg = tuple.right,
+                read_group = tuple.right,
                 write_unpaired_unaligned = true,
                 seed_substring = 30,  # -L
                 score_min = {
@@ -234,7 +234,7 @@ workflow hicpro_core {
                     bowtie_db_tar_gz,
                     read_one_fastq_gz = trim_read1.cutsite_trimmed_fastq,
                     prefix = fq_prefix + ".R1_local",
-                    rg = tuple.right,
+                    read_group = tuple.right,
                     seed_substring = 20,  # -L
                     score_min = {
                         "function_type": "L",
@@ -258,7 +258,7 @@ workflow hicpro_core {
                     bowtie_db_tar_gz,
                     read_one_fastq_gz = trim_read2.cutsite_trimmed_fastq,
                     prefix = fq_prefix + ".R2_local",
-                    rg = tuple.right,
+                    read_group = tuple.right,
                     seed_substring = 20,  # -L
                     score_min = {
                         "function_type": "L",