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docs: example jsons #183

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@a-frantz a-frantz commented Oct 23, 2024

closes #182

@a-frantz a-frantz self-assigned this Oct 23, 2024
workflows/reference/gatk-reference.wdl Outdated Show resolved Hide resolved
}

call util.download as fasta_download { input:
url = reference_fa_url,
outfile_name = reference_fa_name,
md5sum = reference_fa_md5
md5sum = reference_fa_md5,
disk_size_gb = reference_fa_disk_size_gb,
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I was going to object to the workflow-level parameters, but since disk_size_gb is a required parameter without a default in util.download, I don't think we have much choice.

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I had 13 of 14 files marked as viewed. So I reviewed that last remaining file and didn't revisit the others.

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a-frantz commented Nov 1, 2024

Going to leave this open until I get a chance to run all of it through miniwdl. Not difficult, but would take some time I don't have at the moment. Will do that sanity check sometime next week.

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rework example JSONs
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