Update tb-profiler to 6.0.0 (bioconda#46507)

* Update tb-profiler to 6.0.0

* update deps

* remove indexing in build

---------

Co-authored-by: Jody Phelan <jody.phelan@lshtm.ac.uk>

recipes/tb-profiler/build.sh

@@ -1,8 +1,8 @@
 #!/bin/bash
 
 python -m pip install --no-deps --ignore-installed .
-gatk CreateSequenceDictionary -R $PREFIX/share/tbprofiler/tbdb.fasta
-samtools faidx $PREFIX/share/tbprofiler/tbdb.fasta
+# gatk CreateSequenceDictionary -R $PREFIX/share/tbprofiler/tbdb.fasta
+# samtools faidx $PREFIX/share/tbprofiler/tbdb.fasta
 bwa index $PREFIX/share/tbprofiler/tbdb.fasta
 # this downloads Mycobacterium_tuberculosis_h37rv DB to $PREFIX/share/snpeff-SNPEFF_VERSION/data
 snpEff download Mycobacterium_tuberculosis_h37rv

recipes/tb-profiler/meta.yaml

@@ -1,6 +1,6 @@
 {% set name = "tb-profiler" %}
-{% set version = "5.0.1" %}
-{% set sha256 = "71da60ab38cd3c11f1951bac8e26e7cfe2c91700afa8132cf9001e73a2bae252" %}
+{% set version = "6.0.0" %}
+{% set sha256 = "a23600831f0e14d604e3a3a9330e61b852a559a539876c49b294ab31c8e8cbcf" %}
 
 package:
   name: {{name}}
@@ -12,7 +12,7 @@ source:
 
 build:
   noarch: python
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage('tb-profiler', max_pin="x") }}
 
@@ -28,7 +28,7 @@ requirements:
     - python >=3.8
     - git
     - jinja2
-    - pathogen-profiler =3.1.0
+    - pathogen-profiler >=4.0.0
     - filelock
     - docxtpl
     - iqtree