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@superphy

superphy

Online predictive genomics

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  1. semantic semantic Public

    SuperPhy for the semantic web

    Web Ontology Language 18 3

  2. insilico-subtyping insilico-subtyping Public

    Phylotyper: Predicting subtypes from WGS using phylogenetic trees and ancestral reconstruction

    Python 5 1

  3. AMR_Predictor AMR_Predictor Public

    Machine learning methods to predict the anti-microbial resistance of Salmonella.

    Python 3 1

  4. spfy spfy Public

    Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses

    Python 4 2

  5. kmer kmer Public

    Using machine learning to predict E. coli phenotypes

    TeX 1 2

  6. phenores phenores Public

    Predicting bacterial AMR phenotypes from genotypes

    Jupyter Notebook 1 1

Repositories

Showing 10 of 43 repositories
  • superphy/ont-nextflow’s past year of commit activity
    Nextflow 0 1 0 2 Updated Apr 12, 2023
  • prairiedog Public

    next-gen pangenome graphs for predictive genomics

    superphy/prairiedog’s past year of commit activity
    Python 0 0 25 2 Updated Dec 26, 2022
  • grouch Public

    Front-end for superphy/spfy. Support submission of analysis tasks

    superphy/grouch’s past year of commit activity
    JavaScript 0 Apache-2.0 1 14 25 Updated Dec 9, 2022
  • acheron Public

    Machine learning platform for bacterial genome sequence analysis

    superphy/acheron’s past year of commit activity
    Python 1 Apache-2.0 2 0 0 Updated Dec 24, 2021
  • AMR_Predictor Public

    Machine learning methods to predict the anti-microbial resistance of Salmonella.

    superphy/AMR_Predictor’s past year of commit activity
    Python 3 1 0 0 Updated Aug 14, 2020
  • kmer Public

    Using machine learning to predict E. coli phenotypes

    superphy/kmer’s past year of commit activity
    TeX 1 2 0 0 Updated Jan 24, 2020
  • Brucella Public
    superphy/Brucella’s past year of commit activity
    Python 0 1 0 0 Updated Dec 30, 2019
  • Brucella_Pipeline Public archive Forked from ashlynns/Brucella_Snakemake_Test_Env

    A pipeline for the identification of unique nucleotide markes across species of Brucella

    superphy/Brucella_Pipeline’s past year of commit activity
    Python 0 1 0 0 Updated Dec 13, 2019
  • superphy/Brucella_Project_Preliminary’s past year of commit activity
    Python 0 0 0 0 Updated Dec 10, 2019
  • fasta_cleaner Public

    For cleaning fasta files

    superphy/fasta_cleaner’s past year of commit activity
    Python 0 0 0 0 Updated Oct 22, 2019

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