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@sys-bio

UW Sauro Lab

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  1. tellurium tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 109 36

  2. roadrunner roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 39 25

Repositories

Showing 10 of 108 repositories
  • SimBioUI Public

    Web systems biology simulator

    sys-bio/SimBioUI’s past year of commit activity
    JavaScript 0 MIT 2 5 0 Updated Nov 16, 2024
  • antimony Public
    sys-bio/antimony’s past year of commit activity
    C++ 16 BSD-3-Clause 4 25 1 Updated Nov 15, 2024
  • SBMLNetwork Public Forked from adelhpour/SBMLNetwork

    SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.

    sys-bio/SBMLNetwork’s past year of commit activity
    C++ 0 MIT 2 3 1 Updated Nov 13, 2024
  • AntimonyEditor Public

    Antimony Web Editor: A Web Editor for the Antimony Modeling Language

    sys-bio/AntimonyEditor’s past year of commit activity
    TypeScript 0 MIT 1 16 1 Updated Nov 12, 2024
  • PaperSummaryDataset Public

    A workflow for generating summaries of research papers on biological models using generative AI.

    sys-bio/PaperSummaryDataset’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 12, 2024
  • libroadrunner-deps Public

    Dependencies for libroadrunner

    sys-bio/libroadrunner-deps’s past year of commit activity
    CMake 3 5 0 0 Updated Nov 8, 2024
  • evolution Public

    Tool used to create oscillatory networks. Generates reaction network models in Antimony, which can be easily converted to SBML (SBML.org) for further analysis. This is the main repository for Evolution, superseding the original one at https://github.com/ltatka/evolution.

    sys-bio/evolution’s past year of commit activity
    C 0 MIT 0 0 0 Updated Nov 6, 2024
  • OcillatorDatabase Public

    Database of oscillatory chemical network models. Written in Antimony.

    sys-bio/OcillatorDatabase’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 4, 2024
  • BiomodelsStore Public Forked from konankisa/BiomodelsStore
    sys-bio/BiomodelsStore’s past year of commit activity
    JavaScript 0 2 0 0 Updated Nov 4, 2024
  • BiomodelsCache Public

    A biomodels cache for faster lookup.

    sys-bio/BiomodelsCache’s past year of commit activity
    Python 0 CC0-1.0 1 0 0 Updated Nov 1, 2024
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