fixed graphviz installation for github workflow #207
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name: Build and Deploy Documentation | |
on: | |
push: | |
branches: | |
- main # or your default branch name | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.10.13 | |
- name: Install pandoc | |
run: sudo apt-get install -y pandoc | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
- name: Install graphviz | |
run: sudo apt-get install -y graphviz libgraphviz-dev | |
- name: Install dependencies | |
run: | | |
poetry config virtualenvs.create false | |
poetry install --no-interaction | |
- name: Install external dependencies | |
run: | | |
pip install -r https://raw.githubusercontent.com/sysbio-curie/Neko/main/requirements.txt | |
- name: Build documentation | |
run: | | |
cd docs | |
poetry run make html | |
- name: Debug information | |
run: | | |
echo "Current directory:" | |
pwd | |
echo "Directory contents:" | |
ls -R | |
echo "Docs directory contents:" | |
ls -R docs | |
- name: List contents of build directory | |
run: ls -R docs/_build/html | |
- name: Deploy to GitHub Pages | |
uses: peaceiris/actions-gh-pages@v3 | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
publish_dir: ./docs/_build/html | |
force_orphan: true |