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+<li class="toctree-l1"><a class="reference internal" href="../notebooks/2_add_resources.html">Build network using user-defined resources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/3_stepwise_connection.html">Stepwise connection: a focus on the INE algorithm</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/4_Connect_upstream.html">Connect to upstream components</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/5_build_phosphosite_network.html">Build network based on kinase-phosphosite interactions</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/6_ontology.html">Connect to downstream Gene Ontology terms.</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/7_tissue_mapping.html">Map tissue expression</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/8_Compare_networks.html">Network comparison</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../notebooks/9-Recreating_famous_pathways.html">Re-creating famous pathways from SIGNOR and WIKIPATHWAYS using NeKo</a></li>
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+  <section id="neko-visual-visualize-network-networkvisualizer-render">
+<h1>neko._visual.visualize_network.NetworkVisualizer.render<a class="headerlink" href="#neko-visual-visualize-network-networkvisualizer-render" title="Link to this heading"></a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="neko._visual.visualize_network.NetworkVisualizer.render">
+<span class="sig-prename descclassname"><span class="pre">NetworkVisualizer.</span></span><span class="sig-name descname"><span class="pre">render</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'network'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">view</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">highlight_nodes</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">highlight_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'lightyellow'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#neko._visual.visualize_network.NetworkVisualizer.render" title="Link to this definition"></a></dt>
+<dd><p>Render the graph.</p>
+<dl class="simple">
+<dt>Args:</dt><dd><p>output_file (str): The name of the output file.
+view (bool): If True, display the graph.
+highlight_nodes (list): List of nodes to highlight.
+highlight_color (str): Color to use for highlighting nodes.</p>
+</dd>
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