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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 437 98

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 13 11

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 16 1

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 10

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 7 1

Repositories

Showing 10 of 50 repositories
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 2 34 0 Updated Dec 13, 2024
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 5 GPL-3.0 0 10 7 Updated Dec 13, 2024
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 437 98 96 (4 issues need help) 25 Updated Dec 13, 2024
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 7 BSD-3-Clause 1 10 7 Updated Dec 13, 2024
  • sleap-cuda-container Public

    Dockerfiles and test data for a portable SLEAP container with GPU acceleration and various connections.

    talmolab/sleap-cuda-container’s past year of commit activity
    Dockerfile 0 BSD-2-Clause 0 1 2 Updated Dec 4, 2024
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 13 BSD-3-Clause 11 13 7 Updated Nov 27, 2024
  • cosyne_vm Public

    This repository stores the scripts that are locally available on every VM instance we spin up for the COSYNE 2024 conference.

    talmolab/cosyne_vm’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Nov 19, 2024
  • sleap-mot Public

    Standalone multi-object tracking.

    talmolab/sleap-mot’s past year of commit activity
    Python 0 BSD-3-Clause 0 3 0 Updated Nov 18, 2024
  • internal-dockerfiles Public

    dockerfiles for talmo

    talmolab/internal-dockerfiles’s past year of commit activity
    Dockerfile 0 1 0 2 Updated Nov 4, 2024
  • lab-website Public

    Website for Talmo Pereira's lab (https://talmolab.org)

    talmolab/lab-website’s past year of commit activity
    SCSS 1 BSD-3-Clause 0 0 0 Updated Nov 1, 2024
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