Merge pull request #326 from tdwg/update_example

Update example with more data
tdwg · Jun 16, 2023 · 22f5309 · 22f5309
2 parents 31c0a8d + 360dd65
commit 22f5309
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Showing 10 changed files with 146 additions and 105 deletions.
diff --git a/_data/navigation.yml b/_data/navigation.yml
@@ -8,6 +8,9 @@
   href: /data/
 - text: Example dataset
   menu:
+  - text: Example dataset
+    href: /example/
+  - text: "---"
   - text: Deployment 1
     href: /example/00a2c20d/
   - text: Deployment 2

diff --git a/_layouts/example.html b/_layouts/example.html
@@ -4,7 +4,7 @@
 
 {{ content }}
 
-<p class="small">Source: <a href="{{ site.github.repository_url }}/blob/main/example"><code>example dataset</code></a></p>
+<p class="small">This page is generated from the <a href="../">example dataset</a>.</p>
 
 {% assign deployment_id = page.name | remove: '.md' %}
 {% assign deployment = site.data.deployments | where: 'deploymentID', deployment_id | first %}
@@ -13,29 +13,41 @@
 
 <h2 id="{{ deployment_id }}">Deployment information</h2>
 
-<dl>
-  <dt>Location</dt>
-  <dd>
-    <code>{{ deployment.locationName }}</code>
-    (<a href="https://www.google.com/maps/search/?api=1&query={{ deployment.latitude }},{{ deployment.longitude }}&zoom=12"><code>{{ deployment.latitude }}, {{ deployment.longitude }}</code></a>),
-    uncertainty: <code>{{ deployment.coordinateUncertainty }}</code>m
-  <dd>
-  <dt>Duration</dt>
-  <dd>
-    <code>{{ deployment.deploymentStart }}</code> / <code>{{ deployment..deploymentEnd }}</code>
-  </dd>
-  <dt>Camera setup</dt>
-  <dd>
-    interval: <code>{{ deployment.cameraInterval }}</code>,
-    height: <code>{{ deployment.cameraHeight }}</code>,
-    tilt: <code>{{ deployment.cameraTilt }}</code>,
-    heading: <code>{{ deployment.cameraHeading }}</code>
-  </dd>
-  <dt>Bait</dt>
-  <dd>
-    <code>{{ deployment.baitUse }}</code>
-  </dd>
-</dl>
+<h3 id="location">Location</h3>
+<ul>
+  <li>locationID: <code>{{ deployment.locationID }}</code></li>
+  <li>locationName: <code>{{ deployment.locationName }}</code></li>
+  <li>latitude, longitude:  <a href="https://www.google.com/maps/search/?api=1&query={{ deployment.latitude }},{{ deployment.longitude }}&zoom=12"><code>{{ deployment.latitude }}, {{ deployment.longitude }}</a></code></li>
+  <li>coordinateUncertainty:  <code>{{ deployment.coordinateUncertainty }}</code> m</li>
+</ul>
+
+<h3 id="duration">Duration</h3>
+<ul>
+  <li>deploymentStart: <code>{{ deployment.deploymentStart }}</code></li>
+  <li>deploymentEnd: <code>{{ deployment.deploymentEnd }}</code></li>
+</ul>
+
+<h3 id="camera-setup">Camera setup</h3>
+<ul>
+  <li>setupBy: <code>{{ deployment.setupBy }}</code></li>
+  <li>cameraID: <code>{{ deployment.cameraID }}</code></li>
+  <li>cameraModel: <code>{{ deployment.cameraModel }}</code></li>
+  <li>cameraDelay: <code>{{ deployment.cameraDelay }}</code> s</li>
+  <li>cameraHeight: <code>{{ deployment.cameraHeight }}</code> m</li>
+  <li>cameraTilt: <code>{{ deployment.cameraTilt }}</code> °</li>
+  <li>cameraHeading: <code>{{ deployment.cameraHeading }}</code> °</li>
+  <li>detectionDistance: <code>{{ deployment.detectionDistance }}</code> m</li>
+  <li>timestampIssues: <code>{{ deployment.timestampIssues }}</code></li>
+  <li>baitUse: <code>{{ deployment.baitUse }}</code></li>
+  <li>habitat: <code>{{ deployment.habitat }}</code></li>
+</ul>
+
+<h3 id="organizational">Organizational</h3>
+<ul>
+  <li>deploymentGroups: <code>{{ deployment.deploymentGroups }}</code></li>
+  <li>deploymentTags: <code>{{ deployment.deploymentTags }}</code></li>
+  <li>deploymentComments: <code>{{ deployment.deploymentComments }}</code></li>
+</ul>
 
 {% assign event_ids = observations | map: 'eventID' | uniq %}
 {% for event_id in event_ids %}
@@ -49,6 +61,7 @@ <h2 id="{{ event_id }}">Event: {{ event_id }}</h2>
     <div class="carousel-inner">
       {% for media_id in media_ids %}
         {% assign med = media | where: 'mediaID', media_id | first %}
+        {% assign obs = media_observations | where: 'mediaID', media_id | first %}
         {% assign public = med.filePublic | downcase %}
         {% if public == "false" %}
           {% assign public = false %}
@@ -57,6 +70,16 @@ <h2 id="{{ event_id }}">Event: {{ event_id }}</h2>
         {% endif %}
         <div class="carousel-item{% if forloop.first %} active{% endif %}">
           <img class="d-block w-100" src="{% if public %}{{ med.filePath }}{% else %}{{ '/assets/placeholder.svg' | relative_url }}{% endif %}" alt="{{ med.timestamp }}">
+          {% if obs.bboxX %}
+            <div class="bbox" style="
+              position: absolute;
+              border: 3px solid red;
+              left: {{ obs.bboxX | times: 100 }}%;
+              top: {{ obs.bboxY | times: 100 }}%;
+              width: {{ obs.bboxWidth | times: 100 }}%;
+              height: {{ obs.bboxHeight | times: 100 }}%;
+            "></div>
+          {% endif %}
           <div class="carousel-caption d-none d-md-block">
             <code class="fs-5 text-light">{{ media_id }}</code>
           </div>

diff --git a/deployments-table-schema.json b/deployments-table-schema.json
@@ -1,7 +1,7 @@
 {
   "name": "deployments",
   "title": "Deployments",
-  "description": "Table with camera trap deployments. Includes `deploymentID`, start, end, location and camera setup information.",
+  "description": "Table with camera trap placements (deployments). Includes `deploymentID`, start, end, location and camera setup information.",
   "fields": [
     {
       "name": "deploymentID",

diff --git a/example/datapackage.json b/example/datapackage.json
@@ -95,7 +95,7 @@
     "coypu"
   ],
   "image": "",
-  "homepage": "",
+  "homepage": "https://tdwg.github.io/camtrap-dp/example/",
   "sources": [
     {
       "title": "Agouti",
@@ -114,7 +114,7 @@
       "scope": "media"
     }
   ],
-  "bibliographicCitation": "Desmet P, Neukermans A, Van der beeck D, Cartuyvels E (2022). Sample from: MICA - Muskrat and coypu camera trap observations in Belgium, the Netherlands and Germany. Version 1.0. Research Institute for Nature and Forest (INBO). Dataset. https://github.com/tdwg/camtrap-dp/tree/main/example",
+  "bibliographicCitation": "Desmet P, Neukermans A, Van der beeck D, Cartuyvels E (2022). Sample from: MICA - Muskrat and coypu camera trap observations in Belgium, the Netherlands and Germany. Version 1.0. Research Institute for Nature and Forest (INBO). Dataset. https://tdwg.github.io/camtrap-dp/example/",
   "project": {
     "id": "86cabc14-d475-4439-98a7-e7b590bed60e",
     "title": "Management of Invasive Coypu and muskrAt in Europe",

diff --git a/example/deployments.csv b/example/deployments.csv
@@ -1,5 +1,5 @@
 deploymentID,locationID,locationName,latitude,longitude,coordinateUncertainty,deploymentStart,deploymentEnd,setupBy,cameraID,cameraModel,cameraDelay,cameraHeight,cameraTilt,cameraHeading,detectionDistance,timestampIssues,baitUse,featureType,habitat,deploymentGroups,deploymentTags,deploymentComments
-00a2c20d,e254a13c,B_HS_val 2_processiepark,51.496,4.774,187,2020-05-30T04:57:37+02:00,2020-07-01T11:41:41+02:00,Dennis,,,0,1.30,,,,,,,,,boven de stroom,
-29b7d356,2df5259b,B_DL_val 5_beek kleine vijver,51.181,5.655,187,2020-07-29T07:29:41+02:00,2020-08-08T06:20:40+02:00,Danny Van der beeck,,,0,0.70,,,,,,,,,boven de stroom,van 29/07/2020 tot 08/08/2020 120 foto's
-577b543a,ff1535c0,B_DL_val 3_dikke boom,51.184,5.659,187,2020-06-19T23:00:00+02:00,2020-06-29T01:33:22+02:00,Danny Van der beeck,,,0,0.80,,,,,,,,,linkeroever,van 19/06/2020 tot 29/06/2020 63 foto's
-62c200a9,ce943ced,B_DM_val 4_'t WAD,50.699,4.013,187,2021-03-27T21:38:18+01:00,2021-04-18T22:25:00+01:00,Davy,,,0,1.00,,,,,,,,,,
+00a2c20d,e254a13c,B_HS_val 2_processiepark,51.496,4.774,187,2020-05-30T04:57:37+02:00,2020-07-01T11:41:41+02:00,anonymized:3eb30aa,320,Reconyx-HF2X,0,1.30,-15,285,3.20,false,false,trailGame,Campine area with a number of river valleys with valuable grasslands,area:HS | season:spring,position:above stream,
+29b7d356,2df5259b,B_DL_val 5_beek kleine vijver,51.181,5.655,187,2020-07-29T07:29:41+02:00,2020-08-08T06:20:40+02:00,Danny Van der beeck,250,Reconyx-HF2X,0,0.70,-15,350,3.00,false,false,trailGame,Protected marsh with ponds and small brooks,area:DL | season:summer,position:above stream,"from 29/07/2020 to 08/08/2020, 120 photos"
+577b543a,ff1535c0,B_DL_val 3_dikke boom,51.184,5.659,187,2020-06-19T23:00:00+02:00,2020-06-29T01:33:22+02:00,Danny Van der beeck,303,Reconyx-HF2X,0,0.80,-15,20,3.00,false,false,trailGame,Protected marsh with ponds and small brooks,area:DL | season:summer,position:left bank,"from 19/06/2020 to 29/06/2020, 63 photos"
+62c200a9,ce943ced,B_DM_val 4_'t WAD,50.699,4.013,187,2021-03-27T21:38:18+01:00,2021-04-18T22:25:00+01:00,,315,Reconyx-HF2X,0,1.00,-15,55,4.00,false,false,trailGame,"Stream valley with complexes of grassland, poplar plantations, alluvial forrest, marsh vegetations, forbs and ponds",area:DM | season:spring,,
diff --git a/example/media.csv b/example/media.csv
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-cc50edaa,29b7d356,motionDetection,2020-08-02T07:00:18+02:00,https://multimedia.agouti.eu/assets/cc50edaa-ec7d-4c1e-900c-8885e279f9dd/file,true,20200815213924-RCNX0167.JPG,image/jpeg,,,
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