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tesselle · Jul 26, 2024 · 9879483 · 9879483
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diff --git a/CITATION.cff b/CITATION.cff
@@ -1,15 +1,34 @@
-# -----------------------------------------------------------
-# CITATION file created with {cffr} R package, v1.0.0
+# --------------------------------------------
+# CITATION file created with {cffr} R package
 # See also: https://docs.ropensci.org/cffr/
-# -----------------------------------------------------------
+# --------------------------------------------
 
 cff-version: 1.2.0
 message: 'To cite package "aion" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'aion: Archaeological Time Series'
-version: 1.0.3
-doi: 10.5281/zenodo.8032278
+version: 1.0.4
+doi: 10.21105/joss.06210
+identifiers:
+- description: The concept DOI.
+  type: doi
+  value: 10.5281/zenodo.8032278
+- description: The versioned DOI for version 1.0.0.
+  type: doi
+  value: 10.5281/zenodo.8032279
+- description: The versioned DOI for version 1.0.1.
+  type: doi
+  value: 10.5281/zenodo.8273276
+- description: The versioned DOI for version 1.0.2.
+  type: doi
+  value: 10.5281/zenodo.10046426
+- description: The versioned DOI for version 1.0.3.
+  type: doi
+  value: 10.5281/zenodo.10926190
+- description: The Software Heritage identifier for version 1.0.2.
+  type: swh
+  value: swh:1:rel:10b21ffbf3914a6a084766e8f704388582408a6e
 abstract: A toolkit for archaeological time series. This package provides a system
   of classes and methods to represent and work with archaeological time series. Dates
   are represented as "rata die" and can be converted to (virtually) any calendar defined
@@ -27,26 +46,19 @@ authors:
   orcid: https://orcid.org/0000-0002-1011-1244
   affiliation: Universität Bern
 preferred-citation:
-  type: manual
-  title: 'aion: Archaeological Time Series'
+  type: article
+  title: 'aion: An R Package to Represent Archaeological Time Series'
   authors:
   - family-names: Frerebeau
     given-names: Nicolas
     email: nicolas.frerebeau@u-bordeaux-montaigne.fr
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
-  - family-names: Roe
-    given-names: Joe
-    email: joseph.roe@iaw.unibe.ch
-    orcid: https://orcid.org/0000-0002-1011-1244
-    affiliation: Universität Bern
   year: '2024'
-  institution:
-    name: Université Bordeaux Montaigne
-    address: Pessac, France
-  notes: R package version 1.0.3
-  url: https://packages.tesselle.org/aion/
-  doi: 10.5281/zenodo.8032278
+  journal: Journal of Open Source Software
+  volume: '9'
+  issue: '96'
+  doi: 10.21105/joss.06210
 repository: https://CRAN.R-project.org/package=aion
 repository-code: https://github.com/tesselle/aion
 url: https://packages.tesselle.org/aion/
@@ -63,6 +75,20 @@ keywords:
 - archaeological science
 - chronology
 references:
+- type: manual
+  title: 'aion: Archaeological Time Series'
+  authors:
+  - family-names: Frerebeau
+    given-names: Nicolas
+  - family-names: Roe
+    given-names: Joe
+  year: '2024'
+  institution:
+    name: Université Bordeaux Montaigne
+    address: Pessac, France
+  notes: R package version 1.0.4
+  url: https://packages.tesselle.org/aion/
+  doi: 10.5281/zenodo.8032278
 - type: software
   title: 'R: A Language and Environment for Statistical Computing'
   notes: Depends
@@ -87,6 +113,7 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
+  doi: 10.32614/CRAN.package.arkhe
   version: '>= 1.6.0'
 - type: software
   title: graphics
@@ -98,6 +125,7 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
+  doi: 10.32614/CRAN.package.graphics
 - type: software
   title: grDevices
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -108,6 +136,7 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
+  doi: 10.32614/CRAN.package.grDevices
 - type: software
   title: methods
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -118,6 +147,7 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
+  doi: 10.32614/CRAN.package.methods
 - type: software
   title: folio
   abstract: 'folio: Datasets for Teaching Archaeology and Paleontology'
@@ -131,6 +161,7 @@ references:
     orcid: https://orcid.org/0000-0001-5759-4944
     affiliation: Université Bordeaux Montaigne
   year: '2024'
+  doi: 10.32614/CRAN.package.folio
   version: '>= 1.4.0'
 - type: software
   title: knitr
@@ -144,6 +175,7 @@ references:
     email: xie@yihui.name
     orcid: https://orcid.org/0000-0003-0645-5666
   year: '2024'
+  doi: 10.32614/CRAN.package.knitr
 - type: software
   title: markdown
   abstract: 'markdown: Render Markdown with ''commonmark'''
@@ -160,6 +192,7 @@ references:
   - family-names: Horner
     given-names: Jeffrey
   year: '2024'
+  doi: 10.32614/CRAN.package.markdown
 - type: software
   title: rsvg
   abstract: 'rsvg: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or
@@ -173,6 +206,7 @@ references:
     email: jeroen@berkeley.edu
     orcid: https://orcid.org/0000-0002-4035-0289
   year: '2024'
+  doi: 10.32614/CRAN.package.rsvg
 - type: software
   title: svglite
   abstract: 'svglite: An ''SVG'' Graphics Device'
@@ -200,6 +234,7 @@ references:
     given-names: Vaudor
     email: lise.vaudor@ens-lyon.fr
   year: '2024'
+  doi: 10.32614/CRAN.package.svglite
 - type: software
   title: tinysnapshot
   abstract: 'tinysnapshot: Snapshots for Unit Tests using the ''tinytest'' Framework'
@@ -212,6 +247,7 @@ references:
     email: vincent.arel-bundock@umontreal.ca
     orcid: https://orcid.org/0000-0003-2042-7063
   year: '2024'
+  doi: 10.32614/CRAN.package.tinysnapshot
 - type: software
   title: tinytest
   abstract: 'tinytest: Lightweight and Feature Complete Unit Testing Framework'
@@ -225,22 +261,5 @@ references:
     email: mark.vanderloo@gmail.com
     orcid: https://orcid.org/0000-0002-9807-4686
   year: '2024'
-identifiers:
-- description: The concept DOI.
-  type: doi
-  value: 10.5281/zenodo.8032278
-- description: The versioned DOI for version 1.0.0.
-  type: doi
-  value: 10.5281/zenodo.8032279
-- description: The versioned DOI for version 1.0.1.
-  type: doi
-  value: 10.5281/zenodo.8273276
-- description: The versioned DOI for version 1.0.2.
-  type: doi
-  value: 10.5281/zenodo.10046426
-- description: The versioned DOI for version 1.0.3.
-  type: doi
-  value: 10.5281/zenodo.10926190
-- description: The Software Heritage identifier for version 1.0.2.
-  type: swh
-  value: swh:1:rel:10b21ffbf3914a6a084766e8f704388582408a6e
+  doi: 10.32614/CRAN.package.tinytest
+
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: aion
 Title: Archaeological Time Series
-Version: 1.0.3.9000
+Version: 1.0.4
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "nicolas.frerebeau@u-bordeaux-montaigne.fr", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
@@ -42,7 +42,7 @@ VignetteBuilder:
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Collate: 
     'AllClasses.R'
     'AllGenerics.R'

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,5 @@
-# aion 1.0.3.9000
+# aion 1.0.4
+* Post publication CRAN release.
 
 # aion 1.0.3
 * Published in the [*Journal of Open Source Software*](https://doi.org/10.21105/joss.06210).

diff --git a/R/aion-package.R b/R/aion-package.R
@@ -2,7 +2,7 @@
 #'  \tabular{ll}{
 #'   **Package:** \tab aion \cr
 #'   **Type:** \tab Package \cr
-#'   **Version:** \tab 1.0.3 \cr
+#'   **Version:** \tab 1.0.4 \cr
 #'   **License:** \tab GPL-3 \cr
 #'   **Zenodo:** \tab \doi{10.5281/zenodo.8032278} \cr
 #'  }

diff --git a/README.md b/README.md
@@ -68,7 +68,7 @@ Series.” *Journal of Open Source Software*, *9*(96).
 Frerebeau N, Roe J (2024). *aion: Archaeological Time Series*.
 Université Bordeaux Montaigne, Pessac, France.
 <doi:10.5281/zenodo.8032278> <https://doi.org/10.5281/zenodo.8032278>, R
-package version 1.0.2, <https://packages.tesselle.org/aion/>.
+package version 1.0.4, <https://packages.tesselle.org/aion/>.
 
 This package is a part of the tesselle project
 <https://www.tesselle.org>.

diff --git a/codemeta.json b/codemeta.json
@@ -8,13 +8,13 @@
   "codeRepository": "https://github.com/tesselle/aion",
   "issueTracker": "https://github.com/tesselle/aion/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "1.0.3",
+  "version": "1.0.4",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.3.3 (2024-02-29)",
+  "runtimePlatform": "R version 4.4.1 (2024-06-14)",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",
@@ -189,8 +189,33 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "440.237KB",
+  "fileSize": "441.308KB",
   "citation": [
+    {
+      "@type": "ScholarlyArticle",
+      "datePublished": "2024",
+      "author": [
+        {
+          "@type": "Person",
+          "givenName": "Nicolas",
+          "familyName": "Frerebeau"
+        }
+      ],
+      "name": "{aion: An R Package to Represent Archaeological Time Series}",
+      "identifier": "10.21105/joss.06210",
+      "@id": "https://doi.org/10.21105/joss.06210",
+      "sameAs": "https://doi.org/10.21105/joss.06210",
+      "isPartOf": {
+        "@type": "PublicationIssue",
+        "issueNumber": "96",
+        "datePublished": "2024",
+        "isPartOf": {
+          "@type": ["PublicationVolume", "Periodical"],
+          "volumeNumber": "9",
+          "name": "Journal of Open Source Software"
+        }
+      }
+    },
     {
       "@type": "SoftwareSourceCode",
       "datePublished": "2024",
@@ -209,7 +234,7 @@
       "name": "{aion: Archaeological Time Series}",
       "identifier": "10.5281/zenodo.8032278",
       "url": "https://packages.tesselle.org/aion/",
-      "description": "R package version 1.0.3",
+      "description": "R package version 1.0.4",
       "@id": "https://doi.org/10.5281/zenodo.8032278",
       "sameAs": "https://doi.org/10.5281/zenodo.8032278"
     }

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,5 +1,5 @@
 ## Test environments
-* Local R installation: R 4.3.3
+* Local R installation: R 4.4.1
 * Ubuntu (on GitHub Actions): R devel, release, oldrel
 * Windows (on GitHub Actions and win-builder): R devel, release, oldrel
 * MacOS (on GitHub Actions): R release
@@ -10,7 +10,7 @@
 
 ## revdepcheck results
 
-We checked 1 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 2 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages
diff --git a/man/aion-package.Rd b/man/aion-package.Rd
diff --git a/revdep/README.md b/revdep/README.md
@@ -1,24 +1,24 @@
 # Platform
 
-|field    |value                                                                        |
-|:--------|:----------------------------------------------------------------------------|
-|version  |R version 4.3.3 (2024-02-29)                                                 |
-|os       |Ubuntu 22.04.4 LTS                                                           |
-|system   |x86_64, linux-gnu                                                            |
-|ui       |RStudio                                                                      |
-|language |(EN)                                                                         |
-|collate  |fr_FR.UTF-8                                                                  |
-|ctype    |fr_FR.UTF-8                                                                  |
-|tz       |Europe/Paris                                                                 |
-|date     |2024-04-04                                                                   |
-|rstudio  |2023.12.1+402 Ocean Storm (desktop)                                          |
-|pandoc   |3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |
+|field    |value                                                                                |
+|:--------|:------------------------------------------------------------------------------------|
+|version  |R version 4.4.1 (2024-06-14)                                                         |
+|os       |Ubuntu 22.04.4 LTS                                                                   |
+|system   |x86_64, linux-gnu                                                                    |
+|ui       |RStudio                                                                              |
+|language |(EN)                                                                                 |
+|collate  |fr_FR.UTF-8                                                                          |
+|ctype    |fr_FR.UTF-8                                                                          |
+|tz       |Europe/Paris                                                                         |
+|date     |2024-07-26                                                                           |
+|rstudio  |2024.04.2+764 Chocolate Cosmos (desktop)                                             |
+|pandoc   |3.1.11 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/x86_64/ (via rmarkdown) |
 
 # Dependencies
 
 |package |old   |new   |Δ  |
 |:-------|:-----|:-----|:--|
-|aion    |1.0.2 |1.0.3 |*  |
+|aion    |1.0.2 |1.0.4 |*  |
 |arkhe   |1.6.0 |1.6.0 |   |
 
 # Revdeps

diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,6 +1,6 @@
 ## revdepcheck results
 
-We checked 1 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 2 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages