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end to end tutorial, time measurement of spapros steps, and small multiple fixes #271

Merged
merged 23 commits into from
Aug 25, 2023
Merged

end to end tutorial, time measurement of spapros steps, and small multiple fixes #271

merged 23 commits into from
Aug 25, 2023

Commits on Mar 23, 2023

  1. parameter bug fix

    @lisa-sousa
    lisa-sousa committed Mar 23, 2023
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  2. add content of end-toend tutorial

    @lisa-sousa
    lisa-sousa committed Mar 23, 2023
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Commits on May 10, 2023

  1. Merge pull request #266 from theislab/development 

    New version release
    @LouisK92
    LouisK92 authored May 10, 2023
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Commits on May 27, 2023

  1. bug fix set selection

    @lisa-sousa
    lisa-sousa committed May 27, 2023
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Commits on May 31, 2023

  1. correct spelling mistakes

    @lisa-sousa
    lisa-sousa committed May 31, 2023
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Commits on Aug 3, 2023

  1. added description

    @jwrth
    jwrth committed Aug 3, 2023
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Commits on Aug 20, 2023

  1. Add dev files to gitignore

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  2. Add time measurement for selection steps

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  3. Add time measurement for selection steps

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  4. Delete leidenalg install instructions for previous issue in README

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  5. Delete leidenalg install instructions for previous issue in docs

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  6. Fix deprecation warning, use pd.concat instead of append

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  7. Add use_raw argument to masked_dotplot

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  8. Also load probeset table when initializing Selector

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  9. Merge remote-tracking branch 'jwrth/dev' into bug_fix

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  10. Save forest results in case that the pca forest doesn't need genes fr… 

    …om DE forest
    @LouisK92
    LouisK92 committed Aug 20, 2023
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  11. Convert NaNs to empty strings when loading probeset csv

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  12. Add a note that clarifies the scores in selector.plot_clf_genes

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  13. Bug fix n_pcs for knn_overlap

    @LouisK92
    LouisK92 committed Aug 20, 2023
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  14. Merge branch 'probe_design' into bug_fix

    @LouisK92
    LouisK92 committed Aug 20, 2023
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Commits on Aug 23, 2023

  1. Little adjustments to end to end tutorial

    @LouisK92
    LouisK92 committed Aug 23, 2023
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Commits on Aug 25, 2023

  1. Add short tutorial and adjust long end to end tutorial

    @LouisK92
    LouisK92 committed Aug 25, 2023
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  2. Add short tutorial

    @LouisK92
    LouisK92 committed Aug 25, 2023
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