Update release notes #50
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| name: pytest | |
| on: | |
| push: | |
| branches: ["master", "develop"] | |
| pull_request: | |
| branches: ["master", "develop"] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| strategy: | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9'] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| HTSLIB_CONFIGURE_OPTIONS: "--disable-libcurl" | |
| steps: | |
| - name: Checkout sinto | |
| uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: testenv | |
| use-only-tar-bz2: true | |
| - name: Install dependencies | |
| run: | | |
| conda install -c bioconda samtools htslib | |
| conda install -c anaconda flake8 pytest | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade build | |
| - name: Build and install package | |
| run: | | |
| python -m build | |
| pip install . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Test with pytest | |
| run: | | |
| REF_PATH=':' pytest |