GitHub - timp0/mgtst

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Name		Name	Last commit message	Last commit date
Latest commit History 352 Commits
artifacts		artifacts
config		config
data		data
img		img
lib		lib
munge		munge
reports		reports
.gitignore		.gitignore
01-Background.Rmd		01-Background.Rmd
02-Methods-Experimental-Design.Rmd		02-Methods-Experimental-Design.Rmd
03-Methods-Sequencing.Rmd		03-Methods-Sequencing.Rmd
04-Methods-Seq-Processing.Rmd		04-Methods-Seq-Processing.Rmd
05-Methods-Data-Analysis.Rmd		05-Methods-Data-Analysis.Rmd
06-Results-Sample-Selection.Rmd		06-Results-Sample-Selection.Rmd
07-Results-Seq-QA.Rmd		07-Results-Seq-QA.Rmd
08-Results-Seq-Processing.Rmd		08-Results-Seq-Processing.Rmd
09-Results-Count-Values.Rmd		09-Results-Count-Values.Rmd
10-Results-Log-Fold-Change.Rmd		10-Results-Log-Fold-Change.Rmd
11-Discussion.Rmd		11-Discussion.Rmd
12-End-Matter.Rmd		12-End-Matter.Rmd
Analysis_Outline.Rmd		Analysis_Outline.Rmd
Discussion.Rmd		Discussion.Rmd
Introduction.Rmd		Introduction.Rmd
MGTST-Results.Rmd		MGTST-Results.Rmd
Methods.Rmd		Methods.Rmd
README		README
Supplemental.Rmd		Supplemental.Rmd
TODO		TODO
_main.pdf		_main.pdf
bac_con_validation.Rmd		bac_con_validation.Rmd
data_descriptions		data_descriptions
ercc_validation.Rmd		ercc_validation.Rmd
figures.Rmd		figures.Rmd
figures.pdf		figures.pdf
index.Rmd		index.Rmd
logFC_assessment_results.Rmd		logFC_assessment_results.Rmd
mgtst-2017-07-06.Rmd		mgtst-2017-07-06.Rmd
mgtst-2017-07-06.pdf		mgtst-2017-07-06.pdf
mgtst.bib		mgtst.bib
mgtst_pub.Rproj		mgtst_pub.Rproj
packages.bib		packages.bib
pipeline_characteristics.Rmd		pipeline_characteristics.Rmd
qualitative_assessment_results.Rmd		qualitative_assessment_results.Rmd
relative_abundance_assessment_results.Rmd		relative_abundance_assessment_results.Rmd
seq_data_characteristics.Rmd		seq_data_characteristics.Rmd
theta_estimate_results.Rmd		theta_estimate_results.Rmd

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## Development and Application of Two-Sample Titration Dataset for Assessing 16S Metagenomics

* Documentation use of ProjectTemplate
* Data Descriptions
* Raw data file descriptions

Document Outline
https://docs.google.com/document/d/1ftzXVOElT_hokar-OW7oZzqZBRXyMnxmLs4Y9gefRF8/edit?usp=sharing