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Programming for Biomedical Informatics (INFR11260)

School of Informatics, The University of Edinburgh (2024)

Course Lecturer: Prof. Ian Simpson

Contact: (ian.simpson@ed.ac.uk)

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This repository contains course materials including code and data.

Lectures

Lectures all take place in the G.07 Meadows Lecture Theatre - Doorway 4 in the Medical School at Teviot (map).

  • Tuesdays 11:10 - 12:00
  • Thursdays 13:10 - 14:00

The timetable is being updated to refelect the fact that lectures will be in weeks1-4 and 6-11. NB no lectues in week 5.

Coding Environment

There are a few choices for how you might want to do your coding during the course. Please do ask in the discussion boards if you need any help setting these up.

  • Noteable - The simplest, and one that requires very little setup. This is the University JupyterLab instance you can pull this GitHub directly in and start coding straight away
  • Local Jupyter - you can install a version of Jupyter locally using systems like miniconda and Anaconda. There is a good guide to installing Jupyter here.
  • VisualStudioCode - This is a free open-source coding IDE from Microsoft. It's excellent and what I would recommend, not least because it has a large number of extensions that make life easier especially for GitHub and Co-Pilot.

We have prepared a Python introductory mini course in case this is useful to people to brush up on some Python basics.

Note that materials will be added to this GitHub as the course progresses

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