Source code of the Bgee pipeline used to build the Bgee database
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
A collection of miscellaneous bioinformatics scripts
Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
Gene expression experiments using Python and R
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
Smarter database repository
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Microarray Analysis of Differential Expression
Find shared SNPs between different microarray chips
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
Differential Expression Analysis Pipeline
Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)
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