Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

Tutorial for performing redundancy analysis

A tool for downloading HLA alleles, epitopes and frequencies

Long read structural variants in rare disease cohort

A python library to develop genomic data simulators

Complexity of Infection Estimation with Allele Frequencies

(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.

Identification of cancer-causing variants

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

A tool to find reads supporting/opposing structural variant breakpoints

Calculate allele frequencies from a sequence multialignment.

Code for NCD1 and NCD2 statistics to detect long-term balancing selection

Scripts and data processing notes for Russian exome sequencing AF paper

Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

A command-line parser for VCF files designed for population genetics analyses.

A Python script that generate population genotype frequency file from 1000G data

An R script for generating allele frequencies from DNA/amino acid sequence alignments.

Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.

ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.