WebAssembly modules for genomics
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
gia: Genomic Interval Arithmetic
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …
Python Library for data analysis based on GMQL
RNAseq pipeline for alternative splicing junctions
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
A beginner’s guide to Bioinformatics
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
program to make bed12 files from bed 6 files based on the name col of the bed6 file.
Useful NGS utilities for everyday use in the form of stand-alone tool.
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
Predicting Tissue Specific Enhancer Activity from Epigenetic Marks and Sequence
bedtools environment containerized for singularity
Sequencing data preprocessing
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