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brain-connectivity

Here are 44 public repositories matching this topic...

nilearn / nilearn

Machine learning for NeuroImaging in Python

python machine-learning decoding neuroimaging fmri brain-imaging brain-mri mvpa brain-connectivity

Updated Nov 7, 2024
Python

Eden-Kramer-Lab / spectral_connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

python neuroscience spectrogram electrophysiology coherence frequency-domain brain-connectivity multitaper connectivity-measures canonical-coherence phase-lag-index spectral-granger-causality global-coherence

Updated Nov 2, 2023
Python

dPys / PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

workflow optimization networkx ensemble-learning networks fmri decision-trees nilearn fuzzy-logic multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling

Updated Feb 1, 2024
Python

basiralab / RegGNN

Regression Graph Neural Network (regGNN) for cognitive score prediction.

regression brain-connectivity symmetric-positive-definite network-neuroscience riemannian-manifold graph-neural-networks gnn sample-selection cognitive-score matrix-parallel-transport geodesic-transport

Updated Apr 19, 2023
Python

basiralab / BrainNet-ML-ToolBox

Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.

machine-learning machine-learning-algorithms feature-selection feature-extraction classification dimensionality-reduction data-processing brain-connectivity brain-networks brain-disorders

Updated Jun 2, 2020
Python

ActflowToolbox

ColeLab / ActflowToolbox

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

machine-learning neural-networks neuroimaging simulations fmri brain-connectivity brainweb activity-flow

Updated Jun 27, 2024
Python

basiralab / DGN

How to fuse a population of graphs into a single one using graph neural networks?

machine-learning-algorithms network-analysis cbt brain-connectivity geometric-deep-learning brain-networks graph-neural-networks gnn network-integration network-fusion graph-fusion graph-integration brain-gnn atlas-learning

Updated Oct 24, 2023
Python

patrk / pyPTE

Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy

neuroscience eeg brain brain-connectivity eeg-analysis transfer-entropy phase-transfer-entropy

Updated Oct 31, 2024
Python

basiralab / MultiGraphGAN

MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.

generative-adversarial-network gan graph-generation brain-connectivity predictive-learning geometric-deep-learning multimodal-deep-learning multi-view-learning brain-graphs predictive-intelligence source-graph target-graph morphological-brain-networks

Updated Apr 2, 2023
Python

basiralab / GSR-Net

Graph SuperResolution Network using geometric deep learning.

data-generation brain-connectivity generative-models u-net deep-learning-architectures predictive-learning geometric-deep-learning network-neuroscience brain-graphs graph-superresolution gsr-net resolution-connectomes predictive-intelligence

Updated Jan 25, 2021
Python

basiralab / HCAE

HCAE (HyperConnectome AutoEncoder) for brain state identification.

brain-connectivity graph-embedding morphological-brain-networks hyperconnectome hyperconnectivity hyperconnectome-autoencoder hypergraph-embedding multiview-graph distribution-alignment hypergraph-convolutional-layers hypergraph-autoencoding

Updated Oct 19, 2020
Python

basiralab / MultigraphGNet

Predicting multigraph brain population from a single graph

deep-learning network-analysis connectomics brain-connectivity predictive-learning geometric-deep-learning network-neuroscience medical-dataset brain-networks graph-neural-networks gnn graph-augmentation generative-learning multigraph-generation brain-mapping

Updated Dec 10, 2022
Python

basiralab / MGN-Net

MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.

data-integration brain-connectivity biological-networks data-fusion multigraph network-neuroscience brain-networks graph-neural-networks graph-normalizer multiview-networks graph-integration connectomes

Updated Jun 6, 2022
Python

basiralab / ABMT

ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).

generative-adversarial-network gan data-generation multiplex graph-generation gender-classification connectome brain-connectivity brain-network graph-embedding predictive-learning geometric-deep-learning brain-networks predictive-intelligence morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes

Updated Sep 20, 2020
Python

basiralab / MICNet

Multigraph fusion and classification network using graph neural network

neural-networks mri-images brain-connectivity gcn deep-learning-framework network-neuroscience graph-neural-networks network-integration multiview-data network-fusion multi-view-networks multigraph-integration gender-differences data-heterogeneity brain-map multigraph-classification diff-pool ai4medicine

Updated Apr 15, 2022
Python

basiralab / RG-Select

Quantifying the Reproducibility of Graph Neural Networks using Multigraph Brain Data

deep-learning reproducible-research reproducible-science classification reproducibility sag brain-connectivity graph-convolutional-networks gcn multigraph graph-attention-networks network-neuroscience graph-neural-networks diffpool

Updated Jun 7, 2022
Python

basiralab / topoGAN

Multigraph generation from a source graph.

brain-connectivity graph-convolutional-networks adversarial-learning gnns graph-neural-network graph-topology multiview-data generative-learning multigraph-generation multiview-connectome

Updated Nov 16, 2022
Python

basiralab / CGTS-GAN

Topology-guided cyclic graph generation using GCNs.

gan graph-generation brain-connectivity graph-convolutional-networks gcn cyclegan topology-graph graph-neural-networks brain-connectome

Updated Dec 20, 2020
Python

softmatterlab / Braph-2.0-Python

Brain Analysis using Graph Theory

brain-connectivity neurosicence

Updated Sep 29, 2020
Python

heitorbaldo / PyPDC

PyPDC is a Python package to perform asymptotic Partial Directed Coherence estimations for brain connectivity analysis.

pdc brain-connectivity

Updated Nov 5, 2023
Python

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