SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
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Updated
Dec 12, 2020 - MATLAB
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
Infer cell-cell communications based on feed-forward neural network
Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
scMLnet2.0: Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
Pipeline for simulating CCI dynamics across time
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
Learning cell communication from spatial graphs of cells
Investigate cell-cell signaling, by analyzing ligand-receptor interactions in spatial transcriptomic data
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
Spatial direct messaging detected by bivariate Moran
LIANA x Tensor-cell2cell Protocols
20.440 Group Project-Intercellular Communication in vivo
Identifying external communication signals using single-cell transcriptomics data
This repo accompanies the Soelter et al., 2024 manuscript "Altered Glia-Neuron Communication in Alzheimer’s Disease Affects WNT, p53, and NFkB Signaling Determined by snRNA-seq"
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