A course on genomics and bioinformatics from WU
Project Manager for NGS data analysis
Pipeline for Analysis of ChIP-Seq data
A pre-cooked version of our course
cisVar scripts.
An R package containing bioinformatics utility functions. Mostly related to RNAseq data analysis
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
A command-line toolkit for summarizing, analyzing, and interpreting ChIP-Seq and RNA-Seq experiments, designed for enhancer and super-enhancer region analysis in tumor-normal pairs, with applications in differential enrichment and multi-sample domain analysis.
R package for exploratory analysis of ChIPseq data
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
util scripts for various omics data analysis
Which ESR1 and PGR binding sites are functional?
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
A technical note to describe the segmenter package
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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