Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

ABIF parser, writer and generator

Sanger Trace Alignment

A repository of data and notebooks for exploring the fungi DNA sequencing data collected.

autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks

abi2xml is a command-line tool to convert an ABIF file to an XML file. ABIF files (also called ABI trace files) contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers. This software is written in C++ and released under the GPL license version 2.

LC-MS/MS derived peptide retention time deviation calculator across replicates for DDA and DIA derived result files.

The GUI program was designed to assist an in house developed chromatogram for data collection and data analysis. The developed software can help communicate with the device. I have attached the complete script for the software but most of the machine dependent libraries are there in the IGCAR research lab, so the online mode (data collection fr…

An integrated desktop application, created using PyQt5, used to automate data acquisition and analysis in a CO2 to Ethylene pilot plant